| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,247,657 – 20,247,752 |
| Length | 95 |
| Max. P | 0.855211 |
| Location | 20,247,657 – 20,247,752 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 81.37 |
| Mean single sequence MFE | -33.37 |
| Consensus MFE | -22.38 |
| Energy contribution | -22.28 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.855211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20247657 95 + 22224390 AGACACAC--ACAUAUUCGCCAUCCCUCUCUGCAAAAAGAGAGCGUAGGGAGAGUGAGAGAGC--------GAGGCAUCGCCU--UUCAGCGGCGUCUCAUUCGCUA ........--...(((((.((..(.((((((......)))))).)...)).)))))((.(((.--------(((((..(((..--....)))..))))).))).)). ( -30.70) >DroSim_CAF1 4241 94 + 1 AGACACACACACAAAUUCGCCAUCCCUCUCUGGAAAAAGAGAGCGUAGGGAGAGUGAGAGAGC--------GAGGCAUCGCCU--UUCAG---CGUCUCAUUCGCUA ((((.(........((((.((..(.((((((......)))))).)...)).))))(((((.((--------((....))))))--))).)---.))))......... ( -29.70) >DroEre_CAF1 2439 102 + 1 AGACACAC--ACACGUUCUCCAUCCCUCUCUGCAAAAAGAGAGCGUAGGGAGAGUGAGAGUGUGAGAGAGCGAGGCUUCGCUGAAAGCAG---CGUCUCAUUUGCUG ...(((((--.(.((((((((..(.((((((......)))))).)...)))))))).).)))))....((((((....(((((....)))---)).....)))))). ( -39.70) >consensus AGACACAC__ACAAAUUCGCCAUCCCUCUCUGCAAAAAGAGAGCGUAGGGAGAGUGAGAGAGC________GAGGCAUCGCCU__UUCAG___CGUCUCAUUCGCUA ................((.((..(.((((((......)))))).)..))))((((((((.............((((...))))............)))))))).... (-22.38 = -22.28 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:47 2006