| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,246,875 – 20,246,972 |
| Length | 97 |
| Max. P | 0.983991 |
| Location | 20,246,875 – 20,246,972 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 74.24 |
| Mean single sequence MFE | -18.05 |
| Consensus MFE | -12.68 |
| Energy contribution | -12.55 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.983991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20246875 97 - 22224390 AUGUACAAUGGAGAAACGGAGGGAAGUUUUGUUAUUGGUACCAAAUAGAUUUAGACGACUGAGCGAACAGUGUCUGAAUAGUAAAUAUGAGAAACGA ..(((((((((.(((((........))))).))))).)))).......((((((((.((((......)))))))))))).................. ( -20.50) >DroSec_CAF1 1709 74 - 1 -----------------------GAUUUCUGUUAUUGCUACCAAAUAGAUUUAGACAACUGAGCGAACAGUGUCUGAAUGGUAAAUGUGAGAAAAGA -----------------------..(((((..((((..(((((......((((((((.(((......))))))))))))))))))))..)))))... ( -17.90) >DroSim_CAF1 3561 74 - 1 -----------------------GAUUUCUGUUAUUGCUACCAAAUAGAUUUAGACAACUGAGCGAACAGUGUCUGAAUGGUAAAUGUGAGAAAAGA -----------------------..(((((..((((..(((((......((((((((.(((......))))))))))))))))))))..)))))... ( -17.90) >DroEre_CAF1 1682 97 - 1 AUAGGCAAUGGACAAACGAAAGGAAGUUCUGUUAUAGGUAUUCAAUAGACUUAGACGAUUGAGCGAACAGUGUCUGAAUGGUAAAUGUGAGAAAAGA .((((((.((..(...(....)...((((.(((.(((((.........)))))...))).)))))..)).))))))..................... ( -15.90) >consensus _______________________AAGUUCUGUUAUUGCUACCAAAUAGAUUUAGACAACUGAGCGAACAGUGUCUGAAUGGUAAAUGUGAGAAAAGA ..........................((((..((((..((((......((((((((.((((......))))))))))))))))))))..)))).... (-12.68 = -12.55 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:46 2006