Locus 8136

Sequence ID X_DroMel_CAF1
Location 20,245,200 – 20,245,291
Length 91
Max. P 0.599150
window13372

overview

Window 2

Location 20,245,200 – 20,245,291
Length 91
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 80.94
Mean single sequence MFE -31.12
Consensus MFE -24.82
Energy contribution -25.27
Covariance contribution 0.45
Combinations/Pair 1.35
Mean z-score -1.22
Structure conservation index 0.80
SVM decision value 0.13
SVM RNA-class probability 0.599150
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20245200 91 - 22224390
UGUACGGAGGGAAAGGGGAAAGAGAGGGCCGAGAA-CAGUA---ACUGUUUCUCACUUACCGUUGCUGACGUCGCCUGAGGCGUUGGCAGCGCUG
....(((..((.(((((((((.((...((......-..)).---.)).)))))).))).))(((((..(((((......)))))..))))).))) ( -32.90)
>DroSec_CAF1 39 91 - 1
UGUACGGAGGGAAAGGGGAAAGAGAGGGCCCAGGA-CAGUA---ACUGUUUCUCACUCACCGUUGCUGACGUCGCCUGAAGCGUUGGCAGCGCUG
.....((.(((....((((((.((...((......-..)).---.)).)))))).))).))(((((..((((........))))..))))).... ( -28.40)
>DroSim_CAF1 792 91 - 1
UGUACGGAGGGAGAGGGGAAAGAGAGGGCCCAGGA-CAGUA---ACUGUUUCUCACUCACCGUUGCUGACGUCGCCUGAAGCGUUGGCAGCGCUG
....(((..((.(((((((((.((...((......-..)).---.)).)))))).))).))(((((..((((........))))..))))).))) ( -31.40)
>DroEre_CAF1 33 91 - 1
UGUACGGGGGAAAAGGGAAAGGAGAUGUACAAGAA-CAGUA---ACUGUUUCUCACUCACCGUUGCUGACGUCGCCAGAGGCGUUGGCAGCGCUG
.....(((((...((..(.((....(((......)-))...---.)).)..))..))).))(((((..(((((......)))))..))))).... ( -29.50)
>DroYak_CAF1 1951 77 - 1
UGUACGGGGAGAAAGUGGAAAG---------------AGUA---ACUGUUUCUCACUCACCGUUGCUGACGUCGCCUGAGGCGUUGGCAGCGCUG
.....(((((((((((......---------------....---)))..))))).)))..((((((..(((((......)))))..))))))... ( -28.90)
>DroAna_CAF1 39 95 - 1
UGUUGGGAGGGGGAGGAGAAAACGGAGCUGGAGAGAAGGUAAAAGUUGAUUCUCACUCACCGCUGUUGGCGUCGCCUGAGGCGUUGGCAGCGCUG
....(((((...(((((...(((...(((........)))....)))..))))).))).))(((((..(((((......)))))..))))).... ( -35.60)
>consensus
UGUACGGAGGGAAAGGGGAAAGAGAGGGCCCAGAA_CAGUA___ACUGUUUCUCACUCACCGUUGCUGACGUCGCCUGAGGCGUUGGCAGCGCUG
.....((.(((....((((((.((.....................)).)))))).))).))(((((..(((((......)))))..))))).... (-24.82 = -25.27 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:43 2006