Locus 8134

Sequence ID X_DroMel_CAF1
Location 20,243,159 – 20,243,251
Length 92
Max. P 0.825870
window13368

overview

Window 8

Location 20,243,159 – 20,243,251
Length 92
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 76.81
Mean single sequence MFE -33.30
Consensus MFE -18.64
Energy contribution -19.92
Covariance contribution 1.28
Combinations/Pair 1.17
Mean z-score -1.87
Structure conservation index 0.56
SVM decision value 0.70
SVM RNA-class probability 0.825870
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20243159 92 + 22224390
UCCGUUUGCUUCGACAAUCGGGCCAGAGAAACUCUUC---CAAGG---------AUCAGCAGAAGCUAAGUCUGGUUAAUCAGGCCCAGUUCUUGCUGCUAAAC
...((((((..(((.(((.(((((((((...)))).(---((.((---------...(((....)))...))))).......))))).))).)))..)).)))) ( -24.30)
>DroPse_CAF1 2106 101 + 1
UCCGUUUGCUGCGUCAAUCCUCGCAGAGGAGCGCCUC---CAACGGUGUGCGGCAGCAGCAGAAGCUCAGUCUGGUCAACCAGGCGCAGUUCCUGCUGGUCAAU
.....(((((((.....(((((...)))))(((((..---....))))))))))))((((((.((((..((((((....))))))..)))).))))))...... ( -44.80)
>DroSec_CAF1 2637 92 + 1
UCCGUUUGCUCCGGCAAUCGGGCCAGAGAAACUCGUC---CAAGG---------AUCAGCAGAAGCUGAGUCUGGUUAAUCAGGCCCAGUUCUUACUGCUAAAC
((((.((((....)))).)((((.((.....)).)))---)..))---------)..(((((.(((((.((((((....)))))).)))))....))))).... ( -30.10)
>DroEre_CAF1 3380 92 + 1
UCCGUUUGCUCCGGCAAUCGGGCCAGAGAAACUCUUC---CAAGG---------AUCAACAGAAGCUGAGUCUUGUUAAUCAGGCCCAGUUCUUGCUGCUAAAC
...(((((...((((((.((((((((((...))))..---((((.---------.(((........)))..)))).......))))).)...)))))).))))) ( -24.60)
>DroMoj_CAF1 2032 95 + 1
UGCGUCUGCUGCGGCAAUCCGCACAGCGCAGCGCACCGGGCACAC---------AGCAGCAGCAGCUGAGCUUGGUGAAUCAGGCACAGUUCCUGCUGGUCAAC
((((.(((.(((((....))))))))))))(.((.....)).)..---------..((((((.(((((.((((((....)))))).))))).))))))...... ( -41.50)
>DroAna_CAF1 2369 92 + 1
UCCGCCUGCUGAGGCAAUCGGGUCAAAGGAACUCCUC---CAAGG---------ACCAGCAGAAGCUCAGCCUGGUGAAUCAGGCUCAGUUCUUGCUUGUUAAU
...((((....)))).....((((...(((.....))---)...)---------)))((((..((((.(((((((....))))))).))))..))))....... ( -34.50)
>consensus
UCCGUUUGCUGCGGCAAUCGGGCCAGAGAAACUCCUC___CAAGG_________AUCAGCAGAAGCUGAGUCUGGUUAAUCAGGCCCAGUUCUUGCUGCUAAAC
.(((.((((....)))).)))...................................((((((.((((..((((((....))))))..)))).))))))...... (-18.64 = -19.92 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:36 2006