Locus 8133

Sequence ID X_DroMel_CAF1
Location 20,230,514 – 20,230,609
Length 95
Max. P 0.711937
window13367

overview

Window 7

Location 20,230,514 – 20,230,609
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 88.42
Mean single sequence MFE -40.12
Consensus MFE -34.14
Energy contribution -36.33
Covariance contribution 2.19
Combinations/Pair 1.07
Mean z-score -1.57
Structure conservation index 0.85
SVM decision value 0.38
SVM RNA-class probability 0.711937
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20230514 95 - 22224390
AUGGCACUCCACUUCACUCCGCCGCUCUGGACGGGAUGGGACGGAAUCCGGCGGAGAUGCCCUCGACUGGGCAUCGUGUGAACGAGUGACACCCC
.((.(((((...((((((((((((.((((..(......)..))))...)))))))(((((((......)))))))..))))).))))).)).... ( -44.60)
>DroSec_CAF1 2813 95 - 1
AUGGCACUCCACUUCACUCCGCCGCUCUGGACGGGAUGGGACGGGAUCCGGCGGAGAUGCCCUCGACUGGGCAUCGUGUGAACGAGUGACACCCC
.((.(((((...((((((((((((.((((..(......)..))))...)))))))(((((((......)))))))..))))).))))).)).... ( -43.70)
>DroSim_CAF1 2735 95 - 1
AUGGCACUCCACUUCACUCCGCCGCUCUGGACGGGAUGGGACGGGAUCCGGCGGAGAUGCCCUCGACUGGGCAUCGUGUGAACGAGUGACACCCC
.((.(((((...((((((((((((.((((..(......)..))))...)))))))(((((((......)))))))..))))).))))).)).... ( -43.70)
>DroYak_CAF1 2827 78 - 1
-----------------UCCGCCGUUCUGGAGGGGAUGUGACGGGAUCCGGCGGAGAUGCCCUCGACUGGGCAACGUGUGAACGAGUGACACCCC
-----------------((((((((((((..(......)..)))))..)))))))(.(((((......))))).)((((.(.....).))))... ( -28.50)
>consensus
AUGGCACUCCACUUCACUCCGCCGCUCUGGACGGGAUGGGACGGGAUCCGGCGGAGAUGCCCUCGACUGGGCAUCGUGUGAACGAGUGACACCCC
....(((((...((((((((((((.((((..(......)..))))...)))))))(((((((......)))))))..))))).)))))....... (-34.14 = -36.33 +   2.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:36 2006