Locus 8130

Sequence ID X_DroMel_CAF1
Location 20,223,924 – 20,224,109
Length 185
Max. P 0.951497
window13360 window13361

overview

Window 0

Location 20,223,924 – 20,224,014
Length 90
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 72.16
Mean single sequence MFE -12.68
Consensus MFE -9.88
Energy contribution -9.88
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.07
Structure conservation index 0.78
SVM decision value 1.25
SVM RNA-class probability 0.936398
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20223924 90 - 22224390
-----AAUUAUUAAUUUAACAUUUUUUUACAUACAUUUUUUACAAAUACAUAUACUAUGAC--CCAUUUCGCAGGUGGCAAAGGCCACAUACGCCAC
-----........................................................--.......((..(((((....)))))....))... (  -9.40)
>DroSec_CAF1 10791 88 - 1
-----AAUUAUUAAUUUAACAUUUUAAGUCAAAUAUUUUU--CAAAUACAC--ACUUUGACCCCCAUUUUGCAGGUGGCAAAGGCCACAUACGCCAC
-----......................((((((.......--.........--..)))))).........((..(((((....)))))....))... ( -11.77)
>DroSim_CAF1 10036 88 - 1
-----AAUUAUUAAUUCAACAUUUUAAGUCAAAUAUUUUU--CAAAUACAC--ACUUUGACCCCCAUUUUGCAGGUGGCAAAGGCCACAUACGCCAC
-----......................((((((.......--.........--..)))))).........((..(((((....)))))....))... ( -11.77)
>DroEre_CAF1 10819 84 - 1
UGAUAAAUAGUGAAUU--AAAUUGUAAUUUAAAUACUCCG--CUGAUAC------G---AGACUCAAUUCGCAGGUGGCCAAGGCCACAUACGCCAC
.........(((((((--...(((((..............--....)))------)---).....)))))))..(((((....)))))......... ( -16.87)
>DroYak_CAF1 10434 85 - 1
CUAUAAAUAACUAAUU--ACAUUUAAAAUGAAGCACUUCG--CUGAUAC------UA--AGACUCAUUUCGCAGGUGGCCAAGGCCACAUACGCCAC
................--.......(((((((((.....)--)).....------..--....)))))).((..(((((....)))))....))... ( -13.60)
>consensus
_____AAUUAUUAAUU_AACAUUUUAAGUCAAAUAUUUUU__CAAAUACA___ACUAUGACACCCAUUUCGCAGGUGGCAAAGGCCACAUACGCCAC
......................................................................((..(((((....)))))....))... ( -9.88 =  -9.88 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 20,224,014 – 20,224,109
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 92.98
Mean single sequence MFE -21.33
Consensus MFE -21.51
Energy contribution -20.63
Covariance contribution -0.88
Combinations/Pair 1.19
Mean z-score -1.91
Structure conservation index 1.01
SVM decision value 1.41
SVM RNA-class probability 0.951497
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20224014 95 - 22224390
UGAUUCUAUUGAACGCACACAAGAUAAAAUGAACCAUCGCUUUGGAGCUGUUGAUGGACACAAAAUAUUAUUUUCAGCUCCAAAUUGAAAUUCAA
.............................((((...(((.((((((((((..(((((..........)))))..)))))))))).)))..)))). ( -20.60)
>DroSec_CAF1 10879 95 - 1
UGAUUCUAUUGAACGCACACAAGAUUACAUGAGCCAUCGCUUUGGAGCUGUUGAUGAACACAAAAGAACGUUUUCAGCUCCAAAAUGAAAUUCGA
........(((((.((.((..........)).))..(((.((((((((((..((((..(......)..))))..)))))))))).)))..))))) ( -21.70)
>DroSim_CAF1 10124 95 - 1
UGAUUCUAUUGAACGCACACAAGAUUACAUGAGCCAUCGCUUUGGAGCUGUUGAUGAACACAAAAGAACGUUUUCAGCUCCAAAAUGAAAUUCGA
........(((((.((.((..........)).))..(((.((((((((((..((((..(......)..))))..)))))))))).)))..))))) ( -21.70)
>consensus
UGAUUCUAUUGAACGCACACAAGAUUACAUGAGCCAUCGCUUUGGAGCUGUUGAUGAACACAAAAGAACGUUUUCAGCUCCAAAAUGAAAUUCGA
.............................((((...(((.((((((((((..((((............))))..)))))))))).)))..)))). (-21.51 = -20.63 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:30 2006