Locus 8129

Sequence ID X_DroMel_CAF1
Location 20,222,136 – 20,222,246
Length 110
Max. P 0.634849
window13359

overview

Window 9

Location 20,222,136 – 20,222,246
Length 110
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 77.00
Mean single sequence MFE -40.73
Consensus MFE -28.86
Energy contribution -27.67
Covariance contribution -1.19
Combinations/Pair 1.38
Mean z-score -1.06
Structure conservation index 0.71
SVM decision value 0.21
SVM RNA-class probability 0.634849
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20222136 110 + 22224390
CGAGUACGCACGCGUGGCCAUGGGCGAACCCACCGAGGCCACCGGCAGCGAGGACAACAGCGACCUAGAGUCGGUGGCUAGCCACGAGGGUUGAA--CCGAACCCA-CUGUCC----
..(((.......((((((..((((....))))....((((((((((....(((.(......).)))...)))))))))).)))))).(((((...--...))))))-))....---- ( -45.00)
>DroVir_CAF1 10652 110 + 1
UGAAUAUGCGCGUGUGGCCAUGGGCGAACCCACCGAGGCGACUGGCAGCGAGGACAACAGCGAUCUCGAGUCCGUUGCCAGUCACGAUGGCUGAA--CG-----CAAUUAUCGAUAA
.........((((.((((((((((....)))......(.((((((((((..((((.....((....)).)))))))))))))).).))))))).)--))-----)............ ( -43.70)
>DroWil_CAF1 9337 100 + 1
CGAGUAUGCUCGUGUGGCCAUGGGCGAACCCACCGAGGCAACAGGCAGUGAGGACAAUAGCGAUCUAGAGUCAGUUGCCAGUCAUGAAGGCUAAA--A--AACC-------------
((((....))))..(((((.((((....))))....((((((.(((....(((.(......).)))...))).)))))).........)))))..--.--....------------- ( -29.20)
>DroMoj_CAF1 9601 109 + 1
UGAAUAUGCGCGCGUGGCCAUGGGCGAACCCACCGAGGCAACUGGGAGCGAGGACAACAGCGAUCUGGAGUCCGUUGCCAGUCACGAUGGCUAAA--CG-----CA-CUAUCGAUAU
.........(((..((((((((((....))).((.((....)).)).((((((((..(((....)))..)))).))))........)))))))..--))-----).-.......... ( -39.60)
>DroAna_CAF1 9435 109 + 1
UGAGUAUGCCCGGGUGGCGAUGGGCGAACCCACCGAGGCGACCGGCAGCGAGGACAACAGCGACCUGGAGUCGGUGGCCAGCCACGAGGGCUAAGACCCCAACC----UGCCU----
...((..((((..((((((.((((....)))).)..(((.((((((..(.(((.(......).))).).)))))).))).)))))..))))....)).......----.....---- ( -45.80)
>DroPer_CAF1 9564 110 + 1
CGAGUAUGCGCGCGUGGCCAUGGGCGAACCCACCGAGGCGACUGGCAGCGAGGAUAACAGCGACCUGGAGUCGGUUGCCAGCCACGACGGCUAAU--GGACACGUC-ACAACA----
...((.((.(.(((((.(((((((....))).....((((((((((..(.(((..........))).).))))))))))((((.....)))).))--)).))))))-.)))).---- ( -41.10)
>consensus
CGAGUAUGCGCGCGUGGCCAUGGGCGAACCCACCGAGGCGACUGGCAGCGAGGACAACAGCGACCUGGAGUCGGUUGCCAGCCACGAGGGCUAAA__CG_AACCCA__UAUCG____
.......((...((((((..((((....))))....((((((.(((..(.(((.(......).))).).))).)))))).))))))...)).......................... (-28.86 = -27.67 +  -1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:24 2006