| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,200,055 – 20,200,168 |
| Length | 113 |
| Max. P | 0.747804 |
| Location | 20,200,055 – 20,200,168 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.45 |
| Mean single sequence MFE | -23.39 |
| Consensus MFE | -17.20 |
| Energy contribution | -17.78 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.747804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20200055 113 - 22224390 GCGGCCACCGC--AGGCAGGCGAUAAUCUCAAGCUUGCAAUUGCACUGGCAAUUUGUUUGUUAUCUUCUCCGUUUCCGGUUCCCCACGCCC----U-UUCUCGUAUUUCUUCUCUUCCAC ((((...))))--.(((.((.((..((..(((((....((((((....)))))).)))))..))..)).))......((....))..))).----.-....................... ( -24.60) >DroSec_CAF1 26834 113 - 1 GCGGCCACCGC--AAGCUGGCGAUAAUCUCAAGCUUGCAAUUGCACUGGCAAUUUGUAUGUUAUCUUCUCCGUUUCCGGUUUCCCACACCC----U-UCCCCGUCCUCCUUCCCCUCCAC ((((.....((--(((((.(.(.....).).)))))))((((((....)))))).(..(((........(((....)))......)))..)----.-...))))................ ( -21.14) >DroSim_CAF1 26755 113 - 1 GCGGCCACCGC--AGGCAGGCGAUAAUCUCAAGCUUGCAAUUGCACUGGCAAUUUGUUUGUUAUCUUCUCCGUUUCCGGUUUCCCACGUCC----U-UCCCCGUCCUCCUUCCCCUCCAC ((((...))))--(((.(((((((((...(((((....((((((....)))))).))))))))))....(((....)))............----.-.....).)))))).......... ( -23.70) >DroEre_CAF1 16804 109 - 1 GCGGCCACCGC--AGGCAGGCGAUAAUCUCAAGAAUGCAAUUGCACUGGCAAUUUGUUUGUUAUCUCCUCCGUUUCCGGUUUCCCACGUCU----U-UUCCCGU----CUUCUCUUCCGC ((((..((((.--.((.(((.((((((.....(((((.((((((....))))))))))))))))).))))).....)))).....(((...----.-....)))----........)))) ( -24.50) >DroYak_CAF1 17787 87 - 1 GCGGCCACCGC--AGGCGGGCGAUAAUCUCAAGCUUGCAAUUGCACUGGCAAUUUGUUUGUUAUCUCCUCCGCUUCCGGUUUCCCAC-------------------------------UC (.((..((((.--(((((((.(((((...(((((....((((((....)))))).))))))))))...))))))).))))..)))..-------------------------------.. ( -28.30) >DroAna_CAF1 62361 111 - 1 GCGGCUACCAAAAAGCCAGGCGAUAAUCUCAAGUUUGCAAUUGCACUGGCAAUUUGUUUGUUAUCUCCUCCGUUUUUUC--UCCUUCUUUCUUUAUUUCCCUAUCUCUUUUCU------- ..((((.......))))(((.((((((..(((((((((....))).....))))))...)))))).)))..........--................................------- ( -18.10) >consensus GCGGCCACCGC__AGGCAGGCGAUAAUCUCAAGCUUGCAAUUGCACUGGCAAUUUGUUUGUUAUCUCCUCCGUUUCCGGUUUCCCACGUCC____U_UCCCCGUC_U_CUUCUC_UCCAC ..((..((((....((.(((.(((((...(((((....((((((....)))))).)))))))))).))))).....))))..)).................................... (-17.20 = -17.78 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:12 2006