Locus 8110

Sequence ID X_DroMel_CAF1
Location 20,179,090 – 20,179,206
Length 116
Max. P 0.652316
window13309

overview

Window 9

Location 20,179,090 – 20,179,206
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.52
Mean single sequence MFE -24.94
Consensus MFE -24.61
Energy contribution -24.23
Covariance contribution -0.38
Combinations/Pair 1.04
Mean z-score -1.39
Structure conservation index 0.99
SVM decision value 0.25
SVM RNA-class probability 0.652316
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20179090 116 + 22224390
UGAGCACUCCUCCUCAAUGGCACUUGAGCUCGUUCUCAUGCCAGUCAUGACUUUUGUGUCCUUAACCAGCCAUCACACACUCACACAC--ACUGG--CCCUGGCUGCGUUGCUUACACUU
((((........)))).(((((..((((......)))))))))............((((...((((((((((...((...........--..)).--...)))))).))))...)))).. ( -25.52)
>DroSec_CAF1 772 120 + 1
UGAGCACUCCUCCUCAAUGGCACUUGAGCUCGUUCUCAUGCCAGUCAUGACUUUUGUGUCCUUAACCAGCCAUCAUACACACACACACAAACUAGCGCCCUGGCUGCGUUGCUUACACUC
((((........)))).(((((..((((......)))))))))............((((...((((((((((............................)))))).))))...)))).. ( -24.99)
>DroSim_CAF1 197 118 + 1
UGAGCACUCCUCCUCAAUGGCACUUGAGCUCGUUCUCAUGCCAGUCAUGACUUUUGUGUCCUUAACCAGCCAUCAUACACACACACAC--ACUAGCGCCCUGGCUGCGUUGCUUACACUC
((((........)))).(((((..((((......)))))))))............((((...((((((((((................--..........)))))).))))...)))).. ( -25.07)
>DroYak_CAF1 801 116 + 1
UGAGCACUCCUCCUCAAUGGCACUUGAGCUCGUUCUCAUGCCAGUCAUGACUUUUGUGUCCUUAACCAGGCAUCAUACACUCACACAC--ACAAG--CCCCGCCUGCGUUGCUUACACUC
((((........)))).(((((..((((......)))))))))............((((...(((((((((.................--.....--....))))).))))...)))).. ( -24.17)
>consensus
UGAGCACUCCUCCUCAAUGGCACUUGAGCUCGUUCUCAUGCCAGUCAUGACUUUUGUGUCCUUAACCAGCCAUCAUACACACACACAC__ACUAG__CCCUGGCUGCGUUGCUUACACUC
((((........)))).(((((..((((......)))))))))............((((...(((((((((..............................))))).))))...)))).. (-24.61 = -24.23 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:38 2006