Locus 8107

Sequence ID X_DroMel_CAF1
Location 20,165,256 – 20,165,355
Length 99
Max. P 0.963106
window13303

overview

Window 3

Location 20,165,256 – 20,165,355
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 63.91
Mean single sequence MFE -29.10
Consensus MFE -14.54
Energy contribution -14.35
Covariance contribution -0.19
Combinations/Pair 1.27
Mean z-score -1.98
Structure conservation index 0.50
SVM decision value 1.55
SVM RNA-class probability 0.963106
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20165256 99 - 22224390
UUGCGCAACGCUCGAGCUCCGUUCUGCUCGAGUGUUGAAUUG-CAAAUGCGUCAAUUGUCAACU------CUAUGAGGCGCCUCCU-GCGCCCUGCCCCCUAUCCCA-------------
((((.((((((((((((........))))))))))))....)-)))..((........(((...------...)))(((((.....-)))))..))...........------------- ( -34.70)
>DroPse_CAF1 7828 76 - 1
UUGUGCAACGCUCCAGCUCCGCUCAGCUCGAGUGUUGAAUUG-CAAAUGUGUCAAUUGUCAACU------AUGUGAGGCAGUG-------------------------------------
((((.((((((((.((((......)))).))))))))....)-))).(((.(((...(....).------...))).)))...------------------------------------- ( -22.50)
>DroSec_CAF1 13081 112 - 1
UAUUGCAACCCACUAGCCCCCAUCUGGUCAAAGGUUGAAUUGACACAAGCCCCACA-UUCAAAU------AUAAAAGGGCGCUCUU-UGGCCCUGGCCCCUUUACAAUCGGAAUUGCCGC
....((((.(((((((.......)))))....(((((..........((((((...-.......------......))).)))...-.(((....)))......)))))))..))))... ( -22.29)
>DroEre_CAF1 15947 91 - 1
UUGCGCAACGCUCGAGCUCCGUUCUGCUCGAGUGUUGAAUUG-CAAAUGCGUCAAUUGUCAACUACGAGUAUAUGAGGCGCGGC---------------ACGCCCCG-------------
..(((((((((((((((........))))))))))))...((-(...(((.(((.((((.....)))).....))).)))..))---------------))))....------------- ( -33.60)
>DroYak_CAF1 19550 95 - 1
UUGCGCAACGCUCGAGCUCCGUUCUGCUCGAGUGUUGAAUUG-CAAAUGCGUCAAUUGUCAACU------AUUUGAGGCGCCCCCUUGCGC-----CCCUUGCGCCU-------------
((((.((((((((((((........))))))))))))....)-)))..(((.(((...((((..------..))))(((((......))))-----)..))))))..------------- ( -39.00)
>DroPer_CAF1 7933 76 - 1
UUGUGCAACGCUCCAGCUCCGCUCAGCUCGAGUGUUGAAUUG-CAAAUGUGUCAAUUGUCAACU------AUGUGAGGCAGUG-------------------------------------
((((.((((((((.((((......)))).))))))))....)-))).(((.(((...(....).------...))).)))...------------------------------------- ( -22.50)
>consensus
UUGCGCAACGCUCGAGCUCCGUUCUGCUCGAGUGUUGAAUUG_CAAAUGCGUCAAUUGUCAACU______AUAUGAGGCGCCGC________________U___CC______________
.....((((((((.(((........))).))))))))............((((.......................))))........................................ (-14.54 = -14.35 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:33 2006