| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,163,729 – 20,163,845 |
| Length | 116 |
| Max. P | 0.626271 |
| Location | 20,163,729 – 20,163,845 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 87.92 |
| Mean single sequence MFE | -32.80 |
| Consensus MFE | -24.27 |
| Energy contribution | -24.40 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626271 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20163729 116 + 22224390 CAAGAACACCAAUUGCUGCGAAGCGCAAGGUAAC-GCACUGACAAAAGAUUCAAUCCCAUCAAUUGGAUGGGAUUUUUUAUUAAGCUCUGAUAAGCGGAUGGCUGGGCGGAUGGGUG ......((((.....((((..(((((........-))...........(((((((((((((.....))))))))).........(((......))))))).)))..))))...)))) ( -33.50) >DroSec_CAF1 11481 111 + 1 CAAGAACACCAAUUGCUGCGAAGCGCAAGGUAAC-GCACUGACAAAAGAUUCAAUCCUAUCAAGUGGAUUGGAUUUUUUAUUAAGCUCUGAUAAGCGGCUG-----GCGGAUGGGUG ......((((.....((((..(((((........-))..(((.((((((((((((((........)))))))))))))).))).(((......))).))).-----))))...)))) ( -33.70) >DroEre_CAF1 14608 109 + 1 CAAGAGCACCAAUUGCUGCGAGGCGCAAGGUAGC-GCACUGACAAAAGAUUCAAUCCCAUCAAUUGGAUUGGAUU-UUUAUUAAGCUCUGAUAAGCGGGUGGC-----G-GGCGGCG ..............(((((...((((......))-)).(((.(((((((((((((((........))))))))))-))).....(((......)))...)).)-----)-)))))). ( -34.30) >DroYak_CAF1 17958 111 + 1 AAAGAACACCAAUUGCUGCGAGGCGCAAGGUAACAACACUGACAAAAGAUUCAAUCCCAUCAAUUGGAUUGGAUUUUUUAUUAAGCUCUGAUAAGUGGAUGGC-----G-UUGUGUG ..(.(((.(((.(..((.((..(((((..((....))..)).)((((((((((((((........)))))))))))))).....))..))...))..).))).-----)-)).)... ( -29.70) >consensus CAAGAACACCAAUUGCUGCGAAGCGCAAGGUAAC_GCACUGACAAAAGAUUCAAUCCCAUCAAUUGGAUUGGAUUUUUUAUUAAGCUCUGAUAAGCGGAUGGC_____G_AUGGGUG ........(((.(((((.((.((((((..((....))..)).)((((((((((((((........)))))))))))))).....))).))...))))).)))............... (-24.27 = -24.40 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:30 2006