Locus 8104

Sequence ID X_DroMel_CAF1
Location 20,162,766 – 20,162,862
Length 96
Max. P 0.986007
window13299

overview

Window 9

Location 20,162,766 – 20,162,862
Length 96
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 92.42
Mean single sequence MFE -22.90
Consensus MFE -19.94
Energy contribution -20.00
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -2.87
Structure conservation index 0.87
SVM decision value 2.03
SVM RNA-class probability 0.986007
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20162766 96 + 22224390
CCACCAACCUGAACCUGAGCGCCGCAAUAGCUGCACCAUGUUCAGACAUCCGUGUGCACCAGCACACUGACCGCAUACCGCUC------UCACCCACACCCA
........((((((.((.(.((.((....)).)).))).))))))......((((((....))))))(((..((.....))..------))).......... ( -25.80)
>DroSec_CAF1 10545 96 + 1
CCACCAACCUGAACCUGAGCGCCGCAAUAGCUGCAACAUGUUCAGACAUCCGUGUGCACCAGCACACUGACCGCAUACCGCUC------UCACCCACACCCA
........((((((.((...((.((....)).))..)).))))))......((((((....))))))(((..((.....))..------))).......... ( -23.60)
>DroSim_CAF1 10597 96 + 1
CCACCAACCUGAACCUGAGCGCCGCAAUAGCUGCAACAUGUUCAGACAUCCGUGUGCACCAGCACACUGACCGCAUACCGCUC------UCACCCACACCCA
........((((((.((...((.((....)).))..)).))))))......((((((....))))))(((..((.....))..------))).......... ( -23.60)
>DroYak_CAF1 16972 102 + 1
CCACCAACCUGAACCUGAACGCCGCAAUAGCUGCAACAUGUUCUGACAUCCGUGUGCACCAGCACAUGCACCGCAUGCCACACUCACACUCACCCACACCCA
.........(((...(((..((.((....)).))..(((((..((.....(((((((....)))))))))..)))))......)))...))).......... ( -18.60)
>consensus
CCACCAACCUGAACCUGAGCGCCGCAAUAGCUGCAACAUGUUCAGACAUCCGUGUGCACCAGCACACUGACCGCAUACCGCUC______UCACCCACACCCA
........((((((.((...((.((....)).))..)).))))))......((((((....))))))................................... (-19.94 = -20.00 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:29 2006