Locus 8103

Sequence ID X_DroMel_CAF1
Location 20,161,699 – 20,161,795
Length 96
Max. P 0.965312
window13298

overview

Window 8

Location 20,161,699 – 20,161,795
Length 96
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 93.28
Mean single sequence MFE -18.02
Consensus MFE -15.82
Energy contribution -16.22
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.88
SVM decision value 1.58
SVM RNA-class probability 0.965312
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20161699 96 + 22224390
CCCAUUAACAACUUCAAAGUCGAGAUCUCGUCAUGGAUUUUGUGGCCGGCCCAAA-------------CACACAGUCACACACAUUCUAACACUUUGCACUCGACUUUC
...............(((((((((((((......))))..((((((.(.......-------------....).))))))...................))))))))). ( -18.50)
>DroSec_CAF1 9481 96 + 1
CCCAUUAACAACUUCAAAGUCGAGAUCUCGUCAUGGAUUUUGUGGCCGGCCCAAA-------------CACACAGUCACACACAUUCUAACACUUUGCACUCGACUUUC
...............(((((((((((((......))))..((((((.(.......-------------....).))))))...................))))))))). ( -18.50)
>DroSim_CAF1 9532 96 + 1
CCCAUUAACAACUUCAAAGUCGAGAUCUCGUCAGGGAUUUUGUGGCCGGCCCAAA-------------CACACAGUCACACACAUUCUAACACUUUGCACUCGACUUUC
...............((((((((((((((....)))))..((((((.(.......-------------....).))))))...................))))))))). ( -22.00)
>DroEre_CAF1 12469 96 + 1
CCCAUUAACAACUUCAAAGCCGAGAUCUCGUCAUGGAUUUUGCGGCCGGCCCAAA-------------CACACAGUCACACACAUUCUAACAUUUUGCACUCGACUUUC
...............((((.((((((((......))))((((.((....))))))-------------...............................)))).)))). ( -11.20)
>DroYak_CAF1 15668 109 + 1
CCCAUUAACAACUUCAAAGUCGAGAUCUCGUCAUGGAUUUUGUGGCCGGCCCAAAACACACACAGUUACACACAGUCACACACAUUCUAACACUUUGCACUCGACUUUC
...............(((((((((.....((..((..(((((.((....)))))))..)).)).((.((.....)).))....................))))))))). ( -19.90)
>consensus
CCCAUUAACAACUUCAAAGUCGAGAUCUCGUCAUGGAUUUUGUGGCCGGCCCAAA_____________CACACAGUCACACACAUUCUAACACUUUGCACUCGACUUUC
...............(((((((((((((......))))..((((((.(........................).))))))...................))))))))). (-15.82 = -16.22 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:28 2006