Locus 8101

Sequence ID X_DroMel_CAF1
Location 20,154,195 – 20,154,307
Length 112
Max. P 0.784519
window13295

overview

Window 5

Location 20,154,195 – 20,154,307
Length 112
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.58
Mean single sequence MFE -29.30
Consensus MFE -28.60
Energy contribution -28.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -0.26
Structure conservation index 0.98
SVM decision value 0.57
SVM RNA-class probability 0.784519
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20154195 112 - 22224390
UUCCCCCCUCCCCCCCCAGUCACAGU--------UUCCAUUCCCGAUUCUCCACAUCCACUGGCGACCCAAACGCUGGAUGGCACCUAGGUGACAGUCGCUAGCAUCCGGAGGGUCCAGA
.....((((((.......((...((.--------.((.......))..))..)).....(((((((((((.....))).((.(((....))).)))))))))).....))))))...... ( -30.20)
>DroSec_CAF1 9084 101 - 1
UUCC-----------CCAGUCGUAGC--------UUCCAUUGCCGAUUCUCCACAUCCACUGGCGACCCAAACGCUGGAUGGCACCUAGGUGACAGUCGCUAGCAUCCGGAGGGUCCAGA
....-----------.........((--------.......)).((((((((.......(((((((((((.....))).((.(((....))).)))))))))).....)))))))).... ( -29.10)
>DroYak_CAF1 7550 109 - 1
UGUC-----------CCAGUCGCAGUUUCCCAGUUUCCAUUCCCGAUUCUCCACACUCACUGGCGACCCAAACGCUGGAUGGCACCAAGGUGACAGUCGCUAGCAUCCGGAGGGUCCAGA
....-----------.............................((((((((.......(((((((((((.....))).((.(((....))).)))))))))).....)))))))).... ( -28.60)
>consensus
UUCC___________CCAGUCGCAGU________UUCCAUUCCCGAUUCUCCACAUCCACUGGCGACCCAAACGCUGGAUGGCACCUAGGUGACAGUCGCUAGCAUCCGGAGGGUCCAGA
............................................((((((((.......(((((((((((.....))).((.(((....))).)))))))))).....)))))))).... (-28.60 = -28.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:26 2006