| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,153,748 – 20,153,867 |
| Length | 119 |
| Max. P | 0.986639 |
| Location | 20,153,748 – 20,153,867 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 79.77 |
| Mean single sequence MFE | -35.22 |
| Consensus MFE | -23.30 |
| Energy contribution | -23.30 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.66 |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.986639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20153748 119 - 22224390 CCAAUUGGACACUCCCUGUUCACACCUGCACACAUACUAACACAUACUCACACACACGUGGCUCUGCACGGACGCAGAGGUGGCAAUUUAAAGGCUAUCGCCAGCAGCCUUGGCGAUCU ((...((((((.....))))))....(((.(((.................(((....))).((((((......)))))))))))).......))..((((((((.....)))))))).. ( -33.20) >DroSec_CAF1 8794 105 - 1 CCUAUUGGCCACUCCCUGUUCACACCUGCACACA----------UACUCACACACACGUGGCUGUCCG----UGCAGAGGUGGCAAUUUAAAGGCUAUCGCCAACAGCCUUGGCGAUCU .....(((((......(((.(((..((((((..(----------((..(((......)))..)))..)----)))))..)))))).......)))))(((((((.....)))))))... ( -35.42) >DroEre_CAF1 4470 103 - 1 CCUAUCGGCCACUCCUCUGUCGCACCUGCACACAUAC------------ACACACACGAGGCUGUCCG----UGCAGAGGUGGCAAUUCAAAGGCCAUCGCCAGCAGCCUUGGCGAUCU ......((((.......((((((..(((((((((..(------------.(......).)..)))..)----)))))..)))))).......))))((((((((.....)))))))).. ( -37.04) >consensus CCUAUUGGCCACUCCCUGUUCACACCUGCACACAUAC_______UACUCACACACACGUGGCUGUCCG____UGCAGAGGUGGCAAUUUAAAGGCUAUCGCCAGCAGCCUUGGCGAUCU ......((((.........((((..((((.....................(((....)))(.....)......))))..)))).........))))((((((((.....)))))))).. (-23.30 = -23.30 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:25 2006