Locus 8099

Sequence ID	X_DroMel_CAF1
Location	20,153,524 – 20,153,644
Length	120
Max. P	0.542239

overview

Window 3

Location	20,153,524 – 20,153,644
Length	120
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	92.22
Mean single sequence MFE	-45.77
Consensus MFE	-41.37
Energy contribution	-40.27
Covariance contribution	-1.10
Combinations/Pair	1.13
Mean z-score	-1.62
Structure conservation index	0.90
SVM decision value	0.02
SVM RNA-class probability	0.542239
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20153524 120 - 22224390
UGGAUUCUGGAUUCUGGCCGUGCCCAUUAUUAUCACAGCCGACGUCUAAGUCCGGGCUUCAGUCGGGUGAUUGACGAUGUGGCCAGAAGUUGGGACUAGGAUCUGGGACGGAUCUAGAAC
(((.(((..(.(((((((((....(((..(((((((..(((((....((((....))))..))))))))).)))..)))))))))))).)..))))))(((((((...)))))))..... ( -43.80)
>DroSec_CAF1 8565 120 - 1
UGGAUUCUGGAUUCUGGCCGUGCCCAUUAUUAUCACAGCCGACGUCUAAGUCCGGGCUUCAGCCGGGUGAUUGACGAUGUGGCCAGAAGUUGGGACUAGGAUCUGGGGCGGAUCUGGAAC
....(((..(((((.(((...))).............(((...((((.(((((.((((((.((((.((........)).))))..)))))).))))).))))....))))))))..))). ( -44.50)
>DroYak_CAF1 6768 120 - 1
GGGAUUCUGGAUUCUGGUCGUGGCCAUCAUCAACACAGUCGACGUCUAAGUCCCGGCUUCAGCCGGGUGAUUGACGAUGUGGCCAGAAGUUGGGACUAGGAUCUGGUAUGGAUCUGGAGC
.((((((..((((((((((.((((((.((((....((((((((......)))(((((....)))))..)))))..))))))))))........))))))))))..)....)))))..... ( -49.00)
>consensus
UGGAUUCUGGAUUCUGGCCGUGCCCAUUAUUAUCACAGCCGACGUCUAAGUCCGGGCUUCAGCCGGGUGAUUGACGAUGUGGCCAGAAGUUGGGACUAGGAUCUGGGACGGAUCUGGAAC
....((((((((((((((.(((...........))).))))..((((.(((((.((((((.((((.((........)).))))..)))))).))))).)))).......)))))))))). (-41.37 = -40.27 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:24 2006