Locus 8098

Sequence ID X_DroMel_CAF1
Location 20,153,383 – 20,153,481
Length 98
Max. P 0.937662
window13292

overview

Window 2

Location 20,153,383 – 20,153,481
Length 98
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 82.31
Mean single sequence MFE -33.27
Consensus MFE -25.33
Energy contribution -26.64
Covariance contribution 1.31
Combinations/Pair 1.04
Mean z-score -2.14
Structure conservation index 0.76
SVM decision value 1.26
SVM RNA-class probability 0.937662
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20153383 98 - 22224390
-------------------CCCGGAUGAACACUCCUUCGGUGACUU-UGCUGCCUCAGCAGCAGUUGUCCCAACUGCGGUCUGGCCCGUUCCGCAUCUCGUCCGGCAGUUAAACAUUU
-------------------.((((((((..........((.(((.(-((((((....)))))))..)))))...(((((...........)))))..))))))))............. ( -35.90)
>DroSec_CAF1 8424 98 - 1
-------------------CCCGGAUGAACACUCCUUCGGUGACUU-UCCUGCCUUGGCAGCAGUUGUCCCAACUGCGGUCUGCUCCGUUCCGCAUCUCGUCCGGCAGUUAAACAUUU
-------------------.((((((((.........(((.((((.-...(((....)))(((((((...)))))))))))....))).........))))))))............. ( -32.17)
>DroEre_CAF1 3955 118 - 1
UUCUUCGGAUGAGCACUUCUCCGGAUGAGCACCUCUUCGGUGACUUUUCCUGCCUCAGCAGACGUUGUCCAAGCUGCGGUCUGGUCCGCUCCGAAUCUCGUCCUGCAGUUAAACAUUU
......(((((((...(((...(((((((((((.....)))).)))...((((....)))).....))))..(..((((......))))..)))).)))))))............... ( -33.60)
>DroYak_CAF1 6596 99 - 1
-------------------CCCGGAUGAGCACUCCUUCGGUGACUUUUCCUGCCUCAGCAGCAGUUGUCCCAACUGCGGUCUGCUACGUUCCGAAUCUCGUCCGGCAGUUAAACAUUU
-------------------.(((((((((......(((((.(((......(((....)))(((((((...)))))))..........)))))))).)))))))))............. ( -31.40)
>consensus
___________________CCCGGAUGAACACUCCUUCGGUGACUU_UCCUGCCUCAGCAGCAGUUGUCCCAACUGCGGUCUGCUCCGUUCCGAAUCUCGUCCGGCAGUUAAACAUUU
....................(((((((((........(((.((((.....(((....)))((((((.....))))))))))....)))........)))))))))............. (-25.33 = -26.64 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:23 2006