Locus 8095

Sequence ID X_DroMel_CAF1
Location 20,150,726 – 20,150,845
Length 119
Max. P 0.999854
window13287

overview

Window 7

Location 20,150,726 – 20,150,845
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.16
Mean single sequence MFE -25.68
Consensus MFE -24.72
Energy contribution -24.56
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -2.88
Structure conservation index 0.96
SVM decision value 4.27
SVM RNA-class probability 0.999854
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20150726 119 + 22224390
ACAACUUUUAUGACACUUUGUCGUAUUGUUUUUUGUUUGGCUUCUACCGUACUUUGUGGCGAACGUGUCAUAUUCAGUUACGUAUUUAUUCCUUGCCCAGUUUCAUAGUUUCUU-UCCUC
..((((..(((((((((((((((((..((........(((......))).))..))))))))).))))))))...))))...................................-..... ( -20.20)
>DroSec_CAF1 5932 119 + 1
ACAACUUUUAUGACACUUUGUCGUAUUGUUUUUUGUUUGGCUUCUACCGUACUUUGCGGCGAACGUGUCAUAUUCAGUUAUGUAUUUAUUCCUUGCCCAGUUUCAUAGUUUCUU-UCCUC
..((((..(((((((((((((((((..((........(((......))).))..))))))))).))))))))...))))...................................-..... ( -25.00)
>DroSim_CAF1 10981 119 + 1
ACAACUUUUAUGACACUUUGUCGUAUUGUUUUUUGUUUGGCUUCUACCGUACUUUGCGGCGAACGUGUCAUAUUCAGUUAUGUAUUUAUUCCUUGCCCAGUUUCAUAGUUUCUU-UCCUC
..((((..(((((((((((((((((..((........(((......))).))..))))))))).))))))))...))))...................................-..... ( -25.00)
>DroEre_CAF1 1761 118 + 1
ACAACUUUUAUGACACUUUGUCGUAUUGUUUUUUGUUUGGCUUCUGCCGUACUUUGCGGCGAACGUGUCAUAUUCAGUUAUGUAUUUAUUCCUUGCCCAGUUUCAUAGUUUCU--UCCUC
..((((..(((((((((((((((((..((........((((....)))).))..))))))))).))))))))...))))..................................--..... ( -29.10)
>DroYak_CAF1 3894 120 + 1
ACAACUUUUAUGACACUUUGUCGUAUUGUUUUUUGUUUGGCUUCUGCCGUACUUUGCGGCGAACGUGUCAUAUUCAGUUAUGUAUUUAUUCCUUGCCCAGUUUCAUAGUUUCUUUUCCUC
..((((..(((((((((((((((((..((........((((....)))).))..))))))))).))))))))...))))......................................... ( -29.10)
>consensus
ACAACUUUUAUGACACUUUGUCGUAUUGUUUUUUGUUUGGCUUCUACCGUACUUUGCGGCGAACGUGUCAUAUUCAGUUAUGUAUUUAUUCCUUGCCCAGUUUCAUAGUUUCUU_UCCUC
..((((..(((((((((((((((((..((........(((......))).))..))))))))).))))))))...))))......................................... (-24.72 = -24.56 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:19 2006