Locus 8092

Sequence ID X_DroMel_CAF1
Location 20,148,863 – 20,148,977
Length 114
Max. P 0.643071
window13283

overview

Window 3

Location 20,148,863 – 20,148,977
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.65
Mean single sequence MFE -31.64
Consensus MFE -29.70
Energy contribution -29.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.11
Structure conservation index 0.94
SVM decision value 0.23
SVM RNA-class probability 0.643071
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20148863 114 - 22224390
------CAUCCAAAUCCCCGUCCUGCGGCCGAGUUAAACGAAGUAAGUCGGUAAAAAGUCACCAGGGCGUACAUGUGAAAGUCACUUGGGCUCUCGCAUGUCUCUGUUUGAUAAACAAUU
------....(((((...(((((((..(((((.(((.......))).)))))..........))))))).((((((((.((((.....)))).))))))))....))))).......... ( -32.80)
>DroSec_CAF1 4162 114 - 1
------CAUCCAAAUCCCCAUCCUGCGGCCGAGUUAAACGAAGUAAGUCGGUAAAAAGUCACCAGGGCGUACAUGUGAAAGUCACUUGGGCUCUCGCAUGUCUCUGUUUGAUAAACAAUU
------.....................(((((.(((.......))).))))).....((((.(((((...((((((((.((((.....)))).)))))))))))))..))))........ ( -29.70)
>DroSim_CAF1 9205 107 - 1
-------------AUCCCCAUCCUGCGGCCGAGUUAAACGAAGUAAGUCGGUAAAAAGUCACCAGGGCGUACAUGUGAAAGUCACUUGGGCUCUCGCAUGUCUCUGUUUGAUAAACAAUU
-------------..............(((((.(((.......))).))))).....((((.(((((...((((((((.((((.....)))).)))))))))))))..))))........ ( -29.70)
>DroEre_CAF1 79 120 - 1
CAUUCGCAUCGAAAUCCCCAUCCUGCGGCCGAGUUAAACGAAGUAAGUCGGUAAAAAGUCACCAGGGCGUACAUGUGAAAGUCACUUGGGCUCUCGCAUGUCUCUGUUUGAUAAACAAUU
....((((..((........)).))))(((((.(((.......))).))))).....((((.(((((...((((((((.((((.....)))).)))))))))))))..))))........ ( -33.40)
>DroYak_CAF1 2011 120 - 1
CAUCCGCAUCCGAAUCCCCAUCCUGCGGCCGAGUUAAACGAAGUAAGUCGGUAAAAAGUCACCAGGGCGUACAUGUGAAAGUCACUUGGGCUCUCGCAUGUCUCUGUUUGAUAAACAAUU
....((((...((.......)).))))(((((.(((.......))).))))).....((((.(((((...((((((((.((((.....)))).)))))))))))))..))))........ ( -32.60)
>consensus
______CAUCCAAAUCCCCAUCCUGCGGCCGAGUUAAACGAAGUAAGUCGGUAAAAAGUCACCAGGGCGUACAUGUGAAAGUCACUUGGGCUCUCGCAUGUCUCUGUUUGAUAAACAAUU
...........................(((((.(((.......))).))))).....((((.(((((...((((((((.((((.....)))).)))))))))))))..))))........ (-29.70 = -29.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:15 2006