Locus 8091

Sequence ID X_DroMel_CAF1
Location 20,145,116 – 20,145,211
Length 95
Max. P 0.626097
window13282

overview

Window 2

Location 20,145,116 – 20,145,211
Length 95
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 74.59
Mean single sequence MFE -32.73
Consensus MFE -19.29
Energy contribution -19.97
Covariance contribution 0.68
Combinations/Pair 1.20
Mean z-score -1.64
Structure conservation index 0.59
SVM decision value 0.19
SVM RNA-class probability 0.626097
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20145116 95 + 22224390
AAUGCACUUCGCUUCGUUCUCCU------UUCUCCGUUCUCCAUUCUCUGCAGCGCAUUCAGUUCGCUGACAUC--CAUGUGGGGAUGGAGACAGGGAUGAGG
...........((((((.(.(((------.(((((((((.((((....(((((((.(......)))))).))..--...))))))))))))).)))))))))) ( -34.40)
>DroEre_CAF1 39730 101 + 1
AAUGCACUCCGCCUCGACCUCCUUCUCCAUUCGCCAUUCGCCAUUCGCCGCGGCGCAUUCAGCUCGCUGACAUC--CAUGUGGGGAUGGAGACAGGCGCAGGG
...........(((((.(((...(((((((((.((((.((((.........))))...((((....))))....--...))))))))))))).))))).))). ( -34.80)
>DroYak_CAF1 26309 89 + 1
AAUGCACUUCGCCCCGUUCUCCUUCUCCAUU--------------CUCUGCAGUGCAUUCAGUUCGCUGACAUCCCCAUGUGGGGAUGGAGACAGGAAUGAGG
...((.....))((((((((...((((((..--------------...(((((((.(......)))))).))(((((....)))))))))))..)))))).)) ( -29.00)
>consensus
AAUGCACUUCGCCUCGUUCUCCUUCUCCAUUC_CC_UUC_CCAUUCUCUGCAGCGCAUUCAGUUCGCUGACAUC__CAUGUGGGGAUGGAGACAGGAAUGAGG
......(((((..((...((((.(((((......................(((((.........)))))((((....))))))))).))))...))..))))) (-19.29 = -19.97 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:14 2006