Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,144,012 – 20,144,114 |
Length | 102 |
Max. P | 0.690591 |
Location | 20,144,012 – 20,144,114 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 90.20 |
Mean single sequence MFE | -32.28 |
Consensus MFE | -22.77 |
Energy contribution | -23.15 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.07 |
Mean z-score | -2.21 |
Structure conservation index | 0.71 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690591 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20144012 102 + 22224390 GGCAUGUGGAUGUGAAUGUGGCACGUGUGUCUGUGAGUGUGUGUCAAUUUGUGUGCGUGCGCGUUGCAGUCAUGUACAACAUGCAACAAACGUGAGAAACUA .((((((..((((((.((..((.((..(((..(..(((........)))..)..)))..)).))..)).))))))...))))))......(....)...... ( -34.70) >DroSec_CAF1 45164 102 + 1 GGCAUGUGGAUGUGAAUGUGGCACGUGUGUCUGUGAGUGUGUGUCAAUUUGUGUGCGUGCGCGUUGCAGUCAUGUACAACAUGCAACAAACGUGAGAAACUA .((((((..((((((.((..((.((..(((..(..(((........)))..)..)))..)).))..)).))))))...))))))......(....)...... ( -34.70) >DroEre_CAF1 38596 85 + 1 GGCAUGUG--UGUGGAU---------------GGGAGUGUGUGUCAAUUUGUGUGCGUGCGCGUUGCAGUCAUGUACAACAUGCAACAAACGUGAGAAACUA .((((((.--((((.((---------------(.(.(((..(((((.....)).)))..)))....)...))).))))))))))......(....)...... ( -22.90) >DroYak_CAF1 25129 102 + 1 GGCAUGUGGAUGUGGAUGUGGCACGUGUGUCUGCGAGUGUGUGUCAAUUUGUGUGCGUGCGCGUUGCAGUCAUGUACAACAUGCAACAAACGUGAGAAACUA .((((((..(((((..((..((.((..(((..((((((........))))))..)))..)).))..))..)))))...))))))......(....)...... ( -36.80) >consensus GGCAUGUGGAUGUGAAUGUGGCACGUGUGUCUGUGAGUGUGUGUCAAUUUGUGUGCGUGCGCGUUGCAGUCAUGUACAACAUGCAACAAACGUGAGAAACUA .((((((..((((((....((((....)))).(((((((..(((((.....)).)))..))).))))..))))))...)))))).................. (-22.77 = -23.15 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:13 2006