Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,250,636 – 2,250,780 |
Length | 144 |
Max. P | 0.996685 |
Location | 2,250,636 – 2,250,740 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 78.85 |
Mean single sequence MFE | -29.93 |
Consensus MFE | -24.49 |
Energy contribution | -24.93 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.55 |
Structure conservation index | 0.82 |
SVM decision value | 2.73 |
SVM RNA-class probability | 0.996685 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2250636 104 + 22224390 U-CGAAAAAACGAUUAUUGUG-GUAAUUGGCAUUUUGUUCAGUGUACAAUUGCACCACGUGCCGAUGGUGGAAACACUAUAAAUGUGGAAA-------UGGAAAUGCAAAUGC .-........(((((((....-)))))))(((((((.(((.(((((....)))))(((((....((((((....))))))..)))))))).-------..)))))))...... ( -31.20) >DroSec_CAF1 13500 106 + 1 UUUGGUAAAACAAUCAUUGCGGGUAAGCGGCAUUUUGUUCAGUGUACAAUUGCACCACGUGCCGAUGGAGGAAACACCAUAAAUGUGGAAA-------UGGAAAUGCAAAUGC .(((......))).((((((......)).(((((((.(((.(((((....)))))(((((....((((.(....).))))..)))))))).-------..))))))).)))). ( -27.30) >DroYak_CAF1 14528 101 + 1 ------------CUCAAUGUGGCAACUUGGCCUUUUGUUCAGUGUACAAUUGCACCACGUGCCGAUGGUGGAAACACCAUAAAUGUGGAAAUGUAUAAUGGAAAUGCAAAUGU ------------.....((((((......))).....((((.((((((.((...((((((....((((((....))))))..)))))).)))))))).))))...)))..... ( -31.30) >consensus U__G__AAAAC_AUCAUUGUGGGUAAUUGGCAUUUUGUUCAGUGUACAAUUGCACCACGUGCCGAUGGUGGAAACACCAUAAAUGUGGAAA_______UGGAAAUGCAAAUGC .............................(((((((...((((.....))))..((((((....((((((....))))))..))))))............)))))))...... (-24.49 = -24.93 + 0.45)
Location | 2,250,674 – 2,250,780 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 75.21 |
Mean single sequence MFE | -26.86 |
Consensus MFE | -13.46 |
Energy contribution | -13.02 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.25 |
Mean z-score | -2.32 |
Structure conservation index | 0.50 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.982067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2250674 106 + 22224390 AGUGUACAAUUGCACCACGUGCCGAUGGUGGAAACACUAUAAAUGUGGAAA-------UGGAAAUGCAAAUGCGAGGCGGGGCGAAGGGUGCAACAAUAACUGUAAUUAAACG (((......(((((((.(((.(((((((((....))))))...........-------......(((....)))...))).)))...))))))).....)))........... ( -32.30) >DroPse_CAF1 15859 85 + 1 ---------GUACACCACGUGCCCAAGGUUGGCUGGCCG-------GUAAA-------UGCAAAUGCAAAUGAGAGG-----CGAAGGGUGCGACAAUAACUGUAAUUAAACG ---------........((..(((..((....)).(((.-------.((..-------(((....)))..))...))-----)...)))..)).................... ( -19.50) >DroSec_CAF1 13540 106 + 1 AGUGUACAAUUGCACCACGUGCCGAUGGAGGAAACACCAUAAAUGUGGAAA-------UGGAAAUGCAAAUGCGAGGCGGGGCGAAGGGUGCAACAAUAACUGUAAUUAAAAG (((......(((((((.(((.(((((((.(....).))))...........-------......(((....)))...))).)))...))))))).....)))........... ( -29.90) >DroYak_CAF1 14556 108 + 1 AGUGUACAAUUGCACCACGUGCCGAUGGUGGAAACACCAUAAAUGUGGAAAUGUAUAAUGGAAAUGCAAAUGUGAGG-----CGAAGGGUGCAACAAUAACUGUAAUUAAACG (((......(((((((...((((.((((((....))))))...........(((((.......))))).......))-----))...))))))).....)))........... ( -33.10) >DroPer_CAF1 16395 85 + 1 ---------GUACACCACGUGCCCAAGGUUGGCUGGCCG-------GUAAA-------UGCAAAUGCAAAUGAGAGG-----CGAAGGGUGCGACAAUAACAGUAAUUAAACG ---------........((..(((..((....)).(((.-------.((..-------(((....)))..))...))-----)...)))..)).................... ( -19.50) >consensus AGUGUACAAUUGCACCACGUGCCGAUGGUGGAAACACCAUAAAUGUGGAAA_______UGGAAAUGCAAAUGAGAGG_____CGAAGGGUGCAACAAUAACUGUAAUUAAACG ..........((((((.((..((...((((....))))....................((......)).......)).....))...)))))).................... (-13.46 = -13.02 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:17 2006