Locus 8089

Sequence ID X_DroMel_CAF1
Location 20,143,473 – 20,143,577
Length 104
Max. P 0.619812
window13280

overview

Window 0

Location 20,143,473 – 20,143,577
Length 104
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 85.34
Mean single sequence MFE -28.60
Consensus MFE -21.44
Energy contribution -22.00
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.56
Structure conservation index 0.75
SVM decision value 0.18
SVM RNA-class probability 0.619812
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20143473 104 + 22224390
UAGGCAGCAAACCCAGCAAGCCUGUGGAUAAGGGGCCACCAGGCAAGACUUGCAAUCGACACGACUGUCAAUGCACUCGAA--AAAAACGCAUAU------GCUUAGAGUGA
((((((((...........((((((((........))).)))))..((..((((...((((....))))..)))).))...--......))...)------)))))...... ( -25.70)
>DroSec_CAF1 44613 104 + 1
UAGGCAGCAAACCCAGCAAGCCUGUGGAUAAGGGGCCACCAGGCAAGACGUGCAAUCGACACGACUGUCAAUGCACUCGAA--AAAAACGCAUAU------GCUUACAGUAA
((((((((...........((((((((........))).)))))..((.(((((...((((....))))..)))))))...--......))...)------)))))...... ( -29.60)
>DroEre_CAF1 38127 95 + 1
GAUGCAGCAAACCCAGCAAGCCUGUGGAUAAGGGGCCACCGGGCAAGACGUGCAAUCGACACGUCUGUCCAUGCACUCGAAGAAAAAACGCAAGU-----------------
((((((((.......))..((((.(.....).))))....(((((.(((((((....).))))))))))).)))).)).........((....))----------------- ( -29.60)
>DroYak_CAF1 24569 110 + 1
UAGGCAGCAAACCCAGCAAGCCUGUGGAUAAGGGGCCACCAGUCAAGACGUGCAAUCGACACGACUGUCAAUGCAGUCGAA--AAAAACGCAUAUGCAUAUGCCUAGAUUGA
.((((.((.......))..))))((((........))))(((((..(((.((((...((((....))))..)))))))...--......(((((....)))))...))))). ( -29.50)
>consensus
UAGGCAGCAAACCCAGCAAGCCUGUGGAUAAGGGGCCACCAGGCAAGACGUGCAAUCGACACGACUGUCAAUGCACUCGAA__AAAAACGCAUAU______GCUUAGAGUGA
...((.((.......))..((((((((........))).)))))..((.(((((...((((....))))..)))))))...........))..................... (-21.44 = -22.00 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:12 2006