Locus 8086

Sequence ID X_DroMel_CAF1
Location 20,128,175 – 20,128,281
Length 106
Max. P 0.996616
window13274

overview

Window 4

Location 20,128,175 – 20,128,281
Length 106
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 87.83
Mean single sequence MFE -33.08
Consensus MFE -26.61
Energy contribution -27.49
Covariance contribution 0.88
Combinations/Pair 1.07
Mean z-score -2.95
Structure conservation index 0.80
SVM decision value 2.72
SVM RNA-class probability 0.996616
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20128175 106 - 22224390
-----GCAGCUUGCAGUUCGGAGUUCGGAGUUCGGAGUUUGGAGUUUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC
-----((((((((((((((((.(((((((.((((.....)))).))))))).))))))))).......(((((..(((........)))..))))).)))))))....... ( -40.10)
>DroSec_CAF1 29773 92 - 1
-----UCAGCUUCCAGUUCGGAGUUCGG--------------AGCCUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC
-----.((((((.((((((((.((((((--------------...)))))).))))))))........(((((..(((........)))..))))).))))))........ ( -29.20)
>DroSim_CAF1 13194 92 - 1
-----GCAGCUUCCAGUUCGGAGUUCGG--------------AGCUUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC
-----(((((((.((((((((.(((((.--------------....))))).))))))))........(((((..(((........)))..))))).)))))))....... ( -29.20)
>DroEre_CAF1 23963 97 - 1
AGCUCGGAGUUCGGAGUUCGGAGUUCGG--------------AGCUUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC
....(((...((.((((((.(....).)--------------))))).))..)))(((.(((((....(((((..(((........)))..))))))))))...))).... ( -31.30)
>DroYak_CAF1 8932 97 - 1
AUCUCGCAGCUUGCAGUUCGGAGUUCGG--------------AGUUUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC
....(((((((((((((((((.(((((.--------------....))))).))))))))).......(((((..(((........)))..))))).))))))))...... ( -35.60)
>consensus
_____GCAGCUUGCAGUUCGGAGUUCGG______________AGCUUGGAUGCCGGACUGCUUGCAUAUUUGAUUUGUGCAUUUAAACAUUUCAAACAAGCUGUGUCAACC
.....((((((((((((((((.((((((.................)))))).))))))))).......(((((..(((........)))..))))).)))))))....... (-26.61 = -27.49 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:07 2006