Locus 8084

Sequence ID X_DroMel_CAF1
Location 20,123,287 – 20,123,396
Length 109
Max. P 0.557488
window13271

overview

Window 1

Location 20,123,287 – 20,123,396
Length 109
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 91.74
Mean single sequence MFE -28.66
Consensus MFE -27.40
Energy contribution -27.21
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -1.26
Structure conservation index 0.96
SVM decision value 0.05
SVM RNA-class probability 0.557488
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20123287 109 + 22224390
UGGCUUUAUUGCUGAAAAUAAAAUUAAAUCGAAUUCUUGUUUUUGGCGGCGGAGCGAGCCCGUGGUU-------ACUGGCCAGACCCUUGUCUAGCAUUGUUUUUUUUUUUUUGCA
..((((..((((..(((((((((((......)))).)))))))..))))..))))(.(((.((....-------)).))))((((....)))).(((...............))). ( -27.36)
>DroSec_CAF1 25003 102 + 1
UGGCUUUAUUGCUGAAAAUAAAAUUAAAUCGAAUUCUUGUUUUUGGCGGCGGAGCGAGUCCGUGGUU-------ACUGGCGAGACCCUUGUCUAGCAUUGUUU-------UUUGCA
..((((..((((..(((((((((((......)))).)))))))..))))..))))......(..(..-------((..((.((((....)))).))...))..-------.)..). ( -28.30)
>DroEre_CAF1 19660 102 + 1
UGGCUUUAUUGCUGAAAAUAAAAUUAAAUCGAAUUCUUGUUUUUGGCGGCGGAGCGAGUCCGUGGUU-------ACUGGCGAGACCCUUGUCUAGCAUUGUUU-------UUUGCA
..((((..((((..(((((((((((......)))).)))))))..))))..))))......(..(..-------((..((.((((....)))).))...))..-------.)..). ( -28.30)
>DroYak_CAF1 3971 109 + 1
UGGCUUUAUUGCUGAAAAUAAAAUUAAAUCGAAUUCUUGUUUUCGGCGGCGGAGCGAGUCCGUGGUUACUGGUUACUGGCGAGACCCUUGUCUAGCAUUGUUC-------UUUGCA
..((((..(((((((((((((((((......)))).)))))))))))))..))))......(..(..((..((((..((((((...))))))))))...))..-------.)..). ( -30.70)
>consensus
UGGCUUUAUUGCUGAAAAUAAAAUUAAAUCGAAUUCUUGUUUUUGGCGGCGGAGCGAGUCCGUGGUU_______ACUGGCGAGACCCUUGUCUAGCAUUGUUU_______UUUGCA
..((((..(((((((((((((((((......)))).)))))))))))))..))))......(..(.........((..((.((((....)))).))...))..........)..). (-27.40 = -27.21 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:55:04 2006