| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,116,676 – 20,116,796 |
| Length | 120 |
| Max. P | 0.644337 |
| Location | 20,116,676 – 20,116,796 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.28 |
| Mean single sequence MFE | -33.00 |
| Consensus MFE | -28.52 |
| Energy contribution | -28.41 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20116676 120 + 22224390 UUAAAUUGUUGAGCCUGGCCCAUGUUACCAUUACCAUUACCUUCUGCCCUGCUCCCUUAUUGAGUUUCAAUGUAGCAUACAAAAGGGCGCACAUGUGUGGAAAUGCUUUAUGGGUUAACA ...............(((((((((....((((.((((.......(((((((((....(((((.....))))).))).......)))))).......)))).))))...)))))))))... ( -30.25) >DroSec_CAF1 17214 120 + 1 UUAAAUUGUUGAGCCUGGCCCAUGUUACCAUUACCAUUACCUUCUGCCCUGCUCCCUUAUUGAGUUUCAAUGUAGCAUACAAAAGGGCGCACAUGUGUGGAAAUGCUUUAUGGGUUAAAA ...............(((((((((....((((.((((.......(((((((((....(((((.....))))).))).......)))))).......)))).))))...)))))))))... ( -30.25) >DroEre_CAF1 13646 118 + 1 UUAAAUUGUUGAGCCCGGCCCAUGUUACCAUUACCAUUACCUUCAUCCCUGCGCCCUUAUUGAGUUUCAAUGUAGCAUACAAAAGGGCGCACAUGUGUGGAAAUGCUUUAUGGGCCAA-- ................((((((((....((((.((((......(((...(((((((((((((.....))))(((...)))..))))))))).))).)))).))))...))))))))..-- ( -38.50) >consensus UUAAAUUGUUGAGCCUGGCCCAUGUUACCAUUACCAUUACCUUCUGCCCUGCUCCCUUAUUGAGUUUCAAUGUAGCAUACAAAAGGGCGCACAUGUGUGGAAAUGCUUUAUGGGUUAA_A ................((((((((....((((.((((........(((((.....(((((((.....))))).))........)))))........)))).))))...)))))))).... (-28.52 = -28.41 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:59 2006