Locus 8079

Sequence ID X_DroMel_CAF1
Location 20,115,133 – 20,115,253
Length 120
Max. P 0.707653
window13262

overview

Window 2

Location 20,115,133 – 20,115,253
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -30.77
Consensus MFE -30.55
Energy contribution -30.67
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.59
Structure conservation index 0.99
SVM decision value 0.37
SVM RNA-class probability 0.707653
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20115133 120 - 22224390
AAACGGGCUGCUUCUCAAGUUUUUCGACUGAGCAGUUUGUUUAUUACUUGACAAGUUGCGUUUCAAAUCAGUUUAAAGUGGAAAGUCUAAAGUCGAAACUUGAAGGCUUCCAAAAGUCAG
.....((..((((.(((((((..((((((..(((..(((((........)))))..)))...................(((.....))).)))))))))))))))))..))......... ( -31.40)
>DroSec_CAF1 15721 120 - 1
AAACGGGCUGCUUCUCAAGUUUUUCGACUGAGCAGUUUGUUUAUUACUUGACAAGUUGCGUUUCAAAUCAGUUUAAAGUGGAAUGUCUAAAGUCGAAACUUGAAGGCUUCCAAAAGUCAG
.....((..((((.(((((((..((((((..(((..(((((........)))))..)))((((((.............))))))......)))))))))))))))))..))......... ( -32.52)
>DroEre_CAF1 12136 120 - 1
AAACGGGCUGCUUCUCAAGUUUUUCGACUGAGCAGUUUGUUUAUUACUUGACAAGUUGCGUUUCAAAUCAGUUUAAAGUGGAAAGUCCAAAGUCGAAACUUUAAGGCUUCCAAAAGUCAG
.....((..((((...(((((..((((((..(((..(((((........)))))..)))...................(((.....))).)))))))))))..))))..))......... ( -28.40)
>consensus
AAACGGGCUGCUUCUCAAGUUUUUCGACUGAGCAGUUUGUUUAUUACUUGACAAGUUGCGUUUCAAAUCAGUUUAAAGUGGAAAGUCUAAAGUCGAAACUUGAAGGCUUCCAAAAGUCAG
.....((..((((.(((((((..((((((..(((..(((((........)))))..)))...................(((.....))).)))))))))))))))))..))......... (-30.55 = -30.67 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:57 2006