| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,104,528 – 20,104,643 |
| Length | 115 |
| Max. P | 0.880387 |
| Location | 20,104,528 – 20,104,643 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.30 |
| Mean single sequence MFE | -37.03 |
| Consensus MFE | -30.93 |
| Energy contribution | -31.27 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.880387 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20104528 115 + 22224390 ACAGAACGAAAUGGCAACACAAACGUAAACAACUA---ACAAACAUACGUAGUUGG--GCCCUCGGGCCCAGGAUAUGCAGGAUGCAGUAUCCUGGUCGCAGGAUUAGCCUAGGGUUCAG ....(((....((....))...(((((........---.......))))).)))((--(((((.(((((((((((((((.....))).))))))))((....))...))))))))))).. ( -36.16) >DroSec_CAF1 14552 118 + 1 ACAGAACGAAAUGGCAACUCAAACGUAAACAACUACGUACAAACAUACGUAGUUGG--GCCCUCGGGCCCAGGAUAUGCAGGAUGCAGUAUCCUGGUCGCAGGAUUAGCCUAGGGUUCAG ...((((.....(((.........((...((((((((((......)))))))))).--))(((.(.(.(((((((((((.....))).)))))))).).))))....)))....)))).. ( -44.00) >DroAna_CAF1 9572 117 + 1 ACAGAAUAAAAUGGCAACAGAAACGUAAACAACUA---CCAAACAAACGUAACAGAACGCCCUCGGGUCCAGGAUAUGCAGGAUGCAGUGUCCUGGUUGCAGGAUUAGCCCAGGGUUCAG ...........((....))...((((.........---........))))....((..(((((.(((((((((((((((.....))).))))))))...........))))))))))).. ( -30.93) >consensus ACAGAACGAAAUGGCAACACAAACGUAAACAACUA___ACAAACAUACGUAGUUGG__GCCCUCGGGCCCAGGAUAUGCAGGAUGCAGUAUCCUGGUCGCAGGAUUAGCCUAGGGUUCAG ...((((.....(((.........((...((((((..............))))))...))(((.(.(.(((((((((((.....))).)))))))).).))))....)))....)))).. (-30.93 = -31.27 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:53 2006