Locus 8074

Sequence ID X_DroMel_CAF1
Location 20,103,011 – 20,103,122
Length 111
Max. P 0.516161
window13253

overview

Window 3

Location 20,103,011 – 20,103,122
Length 111
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 81.74
Mean single sequence MFE -11.72
Consensus MFE -11.10
Energy contribution -11.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score 0.51
Structure conservation index 0.95
SVM decision value -0.03
SVM RNA-class probability 0.516161
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20103011 111 - 22224390
AACUAUCGAUUGUUAAUACUGCGAUAAUGUCUUCGAUUAACUGUAAAAUAGCAUAAUUGUGUGACCUAUAAACAUAUAAGUAAGUUCCCAUU------CCCACUCCAUUUCCCUUCA
...(((((...((....))..)))))..(((..((((((..(((......)))))))))...)))...........................------................... ( -10.90)
>DroSec_CAF1 13069 96 - 1
AACUAUCGAUUGUUAAUACUGCGAUAACGUCUUCGAUUAACUGUAAAAUAGCAUAAUUGUGUGACCUAUAUACAUAUAAGUAAGUUCCCAUU------CCC---------------A
...(((((...((....))..)))))..(((..((((((..(((......)))))))))...))).....(((......)))..........------...---------------. ( -11.40)
>DroEre_CAF1 10023 111 - 1
AACUAUCGAUUGUUAAUACUGCGAUAACGUCUUCGAUUAACUGUAAAAUAGCAUAAUUGUGUGACCUAC------AUAAGUAAGUUCCCACUCCCAUUCCCACUCCAGUUCCCAUCA
...(((((...((....))..)))))........(((.(((((...............(((.(((.(((------....))).)))..)))..............)))))...))). ( -12.85)
>consensus
AACUAUCGAUUGUUAAUACUGCGAUAACGUCUUCGAUUAACUGUAAAAUAGCAUAAUUGUGUGACCUAUA_ACAUAUAAGUAAGUUCCCAUU______CCCACUCCA_UUCCC_UCA
...(((((...((....))..)))))..(((..((((((..(((......)))))))))...))).................................................... (-11.10 = -11.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:49 2006