Locus 8070

Sequence ID X_DroMel_CAF1
Location 20,099,478 – 20,099,594
Length 116
Max. P 0.555175
window13244

overview

Window 4

Location 20,099,478 – 20,099,594
Length 116
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 77.25
Mean single sequence MFE -27.50
Consensus MFE -16.85
Energy contribution -17.30
Covariance contribution 0.45
Combinations/Pair 1.20
Mean z-score -1.63
Structure conservation index 0.61
SVM decision value 0.04
SVM RNA-class probability 0.555175
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20099478 116 - 22224390
UUGAAAUUAAAUGCAAAUCAGCCGACAAAAAGGAUAAACACAU----ACAUGCGCAUAUGUAUGUAGCCAGGUAUGCGGGAAAGGGUGGGGCAUUGGUCCUCGAAAGGAGCAGAGUUGGC
....................((((((.............((((----(((((....))))))))).(((...(((.(......).))).))).(((.((((....)))).))).)))))) ( -30.00)
>DroSec_CAF1 9762 120 - 1
UUGAAAUUAAAUGCAAAUCAGCCGACAAAAAGGAUAAACACAUACAUACAUGCACAUAUGUAUGUAGCCAGGUAUGCGGGGAAGGCAGGGGCUUUGGUCCUCGAAAGGAGCAGGGUUGGC
....................((((((................((((((((((....))))))))))(((.....(((.......)))..)))((((.((((....)))).)))))))))) ( -32.10)
>DroEre_CAF1 7146 88 - 1
UUGAAAUUAAAUGCAAAUCAGCCGACAAAAAGGAUAAACACAU----ACAUACACAUAUGUA---------------------------GCCUUUGGUUCUCGAAAGGAGCAGGG-CGGC
....................(((...................(----(((((....))))))---------------------------((((...((((.(....))))).)))-)))) ( -20.40)
>consensus
UUGAAAUUAAAUGCAAAUCAGCCGACAAAAAGGAUAAACACAU____ACAUGCACAUAUGUAUGUAGCCAGGUAUGCGGG_AAGG__GGGGCUUUGGUCCUCGAAAGGAGCAGGGUUGGC
....................((((((.....................(((((((....)))))))............................(((.((((....)))).))).)))))) (-16.85 = -17.30 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:41 2006