Locus 807

Sequence ID X_DroMel_CAF1
Location 2,246,949 – 2,247,048
Length 99
Max. P 0.579083
window1305

overview

Window 5

Location 2,246,949 – 2,247,048
Length 99
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 69.35
Mean single sequence MFE -14.80
Consensus MFE -10.09
Energy contribution -10.54
Covariance contribution 0.45
Combinations/Pair 1.16
Mean z-score -1.05
Structure conservation index 0.68
SVM decision value 0.09
SVM RNA-class probability 0.579083
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2246949 99 - 22224390
AUUUGAAAGAAGUA-AACUAACCUCAGAUGACUAGUUAGAAGAAUUGAGUUAUUAAAUAGUAUUUAAC-----------CCUUAGCUAUCUAUACCCCUCCUUUCCACAAU
....(((((.((..-...........(((((((((((.....)))).)))))))..(((((.......-----------.....)))))........)).)))))...... ( -10.00)
>DroSec_CAF1 9857 81 - 1
AUUUGAAAGAAGUA-AACUAACUUCAGAUGGCUAGUUAGAAGAAUUGAGUUAUUAAAUAGUAUUUAAC-----------CCUUAGCUAUCUAU------------------
........(((((.-.....)))))(((((((((((((((....((((....))))......))))))-----------...)))))))))..------------------ ( -17.00)
>DroEre_CAF1 10238 98 - 1
ACUUAAAGGAAAUAAAACUAACUUCAGAUAGCUAAUUAGAAGAAGGAAGCUAUUGAAUAGUAUUUAGCCAUAUUGGCUCCCUUAGCUACCU-------------UCACAAU
.....((((.......((((..(((((.(((((..((......))..))))))))))))))....((((.....)))).))))........-------------....... ( -17.40)
>consensus
AUUUGAAAGAAGUA_AACUAACUUCAGAUGGCUAGUUAGAAGAAUUGAGUUAUUAAAUAGUAUUUAAC___________CCUUAGCUAUCUAU____________CACAAU
........(((((.......)))))((((((((((.............((((............)))).............)))))))))).................... (-10.09 = -10.54 +   0.45) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:15 2006