Locus 8068

Sequence ID X_DroMel_CAF1
Location 20,097,221 – 20,097,339
Length 118
Max. P 0.970180
window13239

overview

Window 9

Location 20,097,221 – 20,097,339
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.42
Mean single sequence MFE -30.94
Consensus MFE -25.44
Energy contribution -25.32
Covariance contribution -0.12
Combinations/Pair 1.12
Mean z-score -2.12
Structure conservation index 0.82
SVM decision value 1.65
SVM RNA-class probability 0.970180
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20097221 118 - 22224390
GCAUAGCCGA-UAAUUUGCU-GUUGGCAGCCAUUCGAAUAUUUUUGGCUUAUUGCAAAUUUUGGGCACGUACAACUCGUAAAGACUAUUUACGAUUCUAAUAAAAAGUGUGCCCCAGUCC
(((..(((((-((......)-))))))(((((............)))))...))).......(((((((.....)(((((((.....)))))))..............))))))...... ( -32.70)
>DroSec_CAF1 7095 117 - 1
GCAUAGCCGA-UAAUUUGCU-GUUG-CUGCCAGUCGAAUAUUUUUGGCUUAUUGCAAAUUUUGGGCACGUACAACUCGUAAAGACUAUUUACGAUUCUAAUAAAAAGUGUGCCCCAGUCC
(((.((((((-..(((((((-(...-....))).)))))....))))))...))).......(((((((.....)(((((((.....)))))))..............))))))...... ( -31.70)
>DroSim_CAF1 7123 118 - 1
GCAUAGCCGANUAAUUUGCU-GUUG-CUGCCAGUCGAAUAUUUUUGGCUUAUUGCAAAUUUUGGGCACGUACAACUCGUAAAGACUAUUUACGAUUCUAAUAAAAAGUGUGCCCCAGUCC
(((.((((((...(((((((-(...-....))).)))))....))))))...))).......(((((((.....)(((((((.....)))))))..............))))))...... ( -32.00)
>DroEre_CAF1 4019 117 - 1
GCAUAGCCGA-UAAUUUGUU-GUUG-CUGCUAGCCGAAUAUUUUUGGCUUAUUGCAAAUUUUGGGCACGUACAACUCGUAAAGACUAUUUACGAUUCUAAUAAAAAGUGUGCCCCAGUCC
((((((((((-(((....))-))))-..))))((((((....))))))....))).......(((((((.....)(((((((.....)))))))..............))))))...... ( -31.50)
>DroAna_CAF1 1327 118 - 1
GCAUGGCCGA-UAAUUUGUUCGUUG-CUGUUAGCUGAAUAUUUUUGGCUUAUUGCAAAUUUUGGGCACGUACAACUCGUAAAGACUAUUUACGAUUCUAAUAAAAAGUAUACCCCAGCUC
(((.((((((-.....((((((..(-(.....))))))))...))))))...))).....(((((...((((...(((((((.....)))))))((......))..))))..)))))... ( -26.80)
>consensus
GCAUAGCCGA_UAAUUUGCU_GUUG_CUGCCAGUCGAAUAUUUUUGGCUUAUUGCAAAUUUUGGGCACGUACAACUCGUAAAGACUAUUUACGAUUCUAAUAAAAAGUGUGCCCCAGUCC
(((.((((((.((.((.(((.((.....)).))).)).))...))))))...))).......(((((((.....)(((((((.....)))))))..............))))))...... (-25.44 = -25.32 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:37 2006