Locus 8065

Sequence ID X_DroMel_CAF1
Location 20,095,318 – 20,095,438
Length 120
Max. P 0.774357
window13234

overview

Window 4

Location 20,095,318 – 20,095,438
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.50
Mean single sequence MFE -45.87
Consensus MFE -36.41
Energy contribution -39.72
Covariance contribution 3.31
Combinations/Pair 1.05
Mean z-score -1.76
Structure conservation index 0.79
SVM decision value 0.54
SVM RNA-class probability 0.774357
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20095318 120 + 22224390
GUAAUGGCCAUGGCCAGGACAUCGAUGAUUCUCCGUAUUCCGUGGGGGAGCAGCUGACAGCCGCGGGAAUCGGGGGAUCCAUCGGUCCAGAAUUAGUUCGCCACCACUGUGAGGUAGUUA
....((((....))))((((..(((((((((((((..((((((((.(..........)..))))))))..)))))))).)))))))))..(((((.(((((.......))))).))))). ( -49.20)
>DroSec_CAF1 5010 120 + 1
GUAAUGGCCAUGGCCAGGACAUCGAUGAUUCUCCGUAUUCCGUGGGGGAGCAGCUGUCAGCGGCGGGAAUCGGGGGAUCCAUCGGUCCAGAAUUAGUUCGCUGNNNNNNNNNNNNNNNNN
....((((....))))((((..(((((((((((((.(((((((......)).((((....)))).))))))))))))).))))))))).(((....)))..................... ( -42.40)
>DroSim_CAF1 5143 120 + 1
GUAAUGGCCAUGGCCAGGACAUCGAUGAUUCUCCGUAUUCCGUGGGGGAGCAGCUGUCAGCCGCGGGAAUCGGGGGAUCCAUCGGUCCAGAAUUAGUUCGCUGCCACUGUGAGGUAGUUA
....((((....))))((((..(((((((((((((..((((((((..((.(....)))..))))))))..)))))))).)))))))))..(((((.(((((.......))))).))))). ( -52.30)
>DroEre_CAF1 2556 114 + 1
GUAAUGGCCAUGGCCAGGACAUCGGUGAUU------ACUCCGUGCGGGAGCAGCUGUCAGCCGCGGGAAUCGGGGGAUCCAUCGGUCCAGAAUUAGUUCGCUGCCACUGUGAGGUAGUUA
....((((....))))((((..(((((...------.((((((((....))).((((.....))))....)))))....)))))))))..(((((.(((((.......))))).))))). ( -39.60)
>consensus
GUAAUGGCCAUGGCCAGGACAUCGAUGAUUCUCCGUAUUCCGUGGGGGAGCAGCUGUCAGCCGCGGGAAUCGGGGGAUCCAUCGGUCCAGAAUUAGUUCGCUGCCACUGUGAGGUAGUUA
....((((....))))((((..(((((((((((((..((((((((..((.......))..))))))))..)))))))).))))))))).(((....)))((((((.......)))))).. (-36.41 = -39.72 +   3.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:33 2006