Locus 8064

Sequence ID X_DroMel_CAF1
Location 20,094,755 – 20,094,850
Length 95
Max. P 0.927263
window13233

overview

Window 3

Location 20,094,755 – 20,094,850
Length 95
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 84.72
Mean single sequence MFE -38.86
Consensus MFE -36.76
Energy contribution -36.32
Covariance contribution -0.44
Combinations/Pair 1.08
Mean z-score -1.49
Structure conservation index 0.95
SVM decision value 1.18
SVM RNA-class probability 0.927263
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20094755 95 + 22224390
UUGUGAAUUAAGAGCCAUGUCCGGCUGCACCGCCCACCGCCUG-------------------------CCCUGGGCGGACAAGGUUAAAGCAGCUGACAGCGAUUACAGCGACAGGCGAC
.............(((.((((((((((((((.....((((((.-------------------------....))))))....)))....)))))))...((.......)))))))))... ( -36.80)
>DroSec_CAF1 4365 120 + 1
UUGUGAAUUAAGAGCCAUGUCCGGCUGCACCGCCCACCGCCCACCGCCCAUCGCACAUCUACCCCACCCCCUGGGCGGACAAGGUUAAAGCAGCUGACAGCGAUUACAGCGACAGGCGAC
.............(((.((((((((((((((((.....))...(((((((.....................)))))))....)))....)))))))...((.......)))))))))... ( -38.50)
>DroSim_CAF1 4487 120 + 1
UUGUGAAUUAAGAGCCAUGUCCGGCUGCACCGCCCACCGCCCACCGCCCAUCGCACAUCUGCCCCACCCCCUGGGCGGACAAGGUUAAAGCAGCUGACAGCGAUUACAGCGACAGGCGAC
.............(((.((((((((((((((.....(((((((.........(((....))).........)))))))....)))....)))))))...((.......)))))))))... ( -41.27)
>consensus
UUGUGAAUUAAGAGCCAUGUCCGGCUGCACCGCCCACCGCCCACCGCCCAUCGCACAUCU_CCCCACCCCCUGGGCGGACAAGGUUAAAGCAGCUGACAGCGAUUACAGCGACAGGCGAC
.............(((.((((((((((((((.....(((((((............................)))))))....)))....)))))))...((.......)))))))))... (-36.76 = -36.32 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:32 2006