| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,094,480 – 20,094,600 |
| Length | 120 |
| Max. P | 0.621537 |
| Location | 20,094,480 – 20,094,600 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.93 |
| Mean single sequence MFE | -51.30 |
| Consensus MFE | -39.31 |
| Energy contribution | -40.53 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20094480 120 - 22224390 GCGGGUCAGUCGAGUUGAAAAACACCUUCAUGGCCCACUGGCUUGCUGACCAUGCCCCAACAUACGCCCAACUUGGGGGGGCGGAGGCGGAUUCGGAUGCGGAUGCGGAAGUGAAGGUGG .(((.((....)).))).....(((((((((..((((.(.((...((((...((((((..(...(.(((.....))).).).)).))))...))))..)).).)).))..))))))))). ( -43.80) >DroSec_CAF1 4101 112 - 1 GCGGGUCAGUCGGGUUGAAAAACACCUUCAUGGCCCACUGGCUCGCUGACCACGCCUCCACGUA-GCCCAACUUGGGGGCGGC-AGACGGAUU------CGGAUGCGGAAGUGGAGGUGG ((((((((((.((((((((.......))))..))))))))))))))......(((((((((...-((((.......)))).((-(..((....------))..)))....))))))))). ( -56.70) >DroSim_CAF1 4226 109 - 1 GCGGGUCAGUCGGGUUGAAAAACACCUUCAUGGCCCACUGGCUCGCUGACCACGCCUCCACCUA-GCCCGACUUGGGGGCGCC-AG---GAUU------CGGAUGCGGAAGUGGAGGUGG ((((((((((.((((((((.......))))..))))))))))))))......(((((((((...-(((((((((((.....))-))---)..)------)))..))....))))))))). ( -53.40) >consensus GCGGGUCAGUCGGGUUGAAAAACACCUUCAUGGCCCACUGGCUCGCUGACCACGCCUCCACAUA_GCCCAACUUGGGGGCGCC_AG_CGGAUU______CGGAUGCGGAAGUGGAGGUGG ((((((((((.((((((((.......))))..))))))))))))))......(((((((((....((((.......))))...................((....))...))))))))). (-39.31 = -40.53 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:31 2006