Locus 8062

Sequence ID X_DroMel_CAF1
Location 20,093,978 – 20,094,098
Length 120
Max. P 0.647889
window13231

overview

Window 1

Location 20,093,978 – 20,094,098
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.69
Mean single sequence MFE -37.82
Consensus MFE -28.65
Energy contribution -30.34
Covariance contribution 1.69
Combinations/Pair 1.17
Mean z-score -1.59
Structure conservation index 0.76
SVM decision value 0.24
SVM RNA-class probability 0.647889
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20093978 120 + 22224390
UUCACUUCCAACGGACAUGGGCCACCAAUUGAUGCAGGCGCAUCUGCAAGAUGCAUCUUCAAUUUGCAGCACAAUGCGAGCCAAUCACUGCGUAAACAAUUGGCCGACCGCGAGUCUGGU
...........(((((.(((((..(((((((((((((..(((((.....)))))........((((((......)))))).......))))))...)))))))..).)).)).))))).. ( -37.50)
>DroSec_CAF1 3627 120 + 1
UUCACUUCCGCCGGACAUGGGCCACCAAUGGAUGCAGGCGCAUCUGCAAGAUGCAUCUUCAAUUUGCAGCACAAUGCGAGCCAAUCACUGCGUAAACAAUUGGCCGACCGCGAGUCCGGU
.........(((((((.(((((..((((((.((((((..(((((.....)))))........((((((......)))))).......))))))...).)))))..).)).)).))))))) ( -41.30)
>DroSim_CAF1 3745 120 + 1
UUCACUUCCGCCGGACAUGGGCCACCAAUGGAUGCAGGCGCAUCUGCAAGAUGCAUCUUCAAUUUGCAGCACAAUGCGAGCCAAUCACUGCGUAAACAAUUGGCCGACCGCGAGUCCGGU
.........(((((((.(((((..((((((.((((((..(((((.....)))))........((((((......)))))).......))))))...).)))))..).)).)).))))))) ( -41.30)
>DroEre_CAF1 1242 106 + 1
-------------GAUAGUUGCAUCCACGGAAUGCAGGCGCAUCUGCAAGAUGCAUCUUCUAUUCGCAACACAAUGCGCGGCAAUCAGUGUGUAAACAAUU-GCCGACCACGAGUCCGGU
-------------(((((.((((((..((((.(((....)))))))...))))))....)))))((((......))))(((((((...(((....))))))-))))(((........))) ( -31.20)
>consensus
UUCACUUCCGCCGGACAUGGGCCACCAAUGGAUGCAGGCGCAUCUGCAAGAUGCAUCUUCAAUUUGCAGCACAAUGCGAGCCAAUCACUGCGUAAACAAUUGGCCGACCGCGAGUCCGGU
.........(((((((...(((((.......((((((..(((((.....)))))........((((((......)))))).......)))))).......)))))(....)..))))))) (-28.65 = -30.34 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:30 2006