Locus 8061

Sequence ID X_DroMel_CAF1
Location 20,093,264 – 20,093,380
Length 116
Max. P 0.879708
window13230

overview

Window 0

Location 20,093,264 – 20,093,380
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 81.92
Mean single sequence MFE -43.95
Consensus MFE -32.96
Energy contribution -33.65
Covariance contribution 0.69
Combinations/Pair 1.12
Mean z-score -1.96
Structure conservation index 0.75
SVM decision value 0.91
SVM RNA-class probability 0.879708
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20093264 116 + 22224390
UGGGUGCCGGGCACUGCCUUUGUGUCCUGCCAGGACCUGCCACUUGGAGCAAAAGGGUUCAGCCGAAGGCAAUUAGAAACGGUGGCAAUGUCUUGUAUC----CUACACUGGGCGAAAUC
..(((((...)))))((((..((((.....((((((.(((((((..((((......)))).(((...)))..........)))))))..))))))....----..)))).))))...... ( -38.90)
>DroSec_CAF1 3077 120 + 1
UGGGUGCCGGGCACUGCCUUUGUGUCCUGCCAGGACCUGCCACUUGGCUUAAAAGGGUUCAGCCGAAGGCAAUUAGAAACGGUGGCAGUGUCUUGUACACUGUCUACACUGAGCGCAAUC
.((((((.((((((((((.((((((((.....)))).((((..((((((.((.....)).)))))).)))).......)))).)))))))))).)))).))................... ( -43.20)
>DroSim_CAF1 3208 116 + 1
UGGGUGCCGGGCACUGCCUUUGUGUCCUGCCAGGACCUGCCACUUGGCUCAAAAGGAUUCAGCCGAAGGCAAUUAGAAACGGUGGCAGUGUCUUGUAUC----CUACACUGGGCGAAAUC
.((((((.((((((((((.((((((((.....)))).((((..((((((.((.....)).)))))).)))).......)))).)))))))))).)))))----)................ ( -46.40)
>DroEre_CAF1 1020 100 + 1
UGGCUGCAGGA--------------CCUGCCAGGACCUGCCACUUG-CUCAGAAUGG-GCAGCCGAAGGCAAUUAGAAGCGGUGGCAGUGUCCUGUUUC----CUGCAUCCUGCGAAAUC
.((.(((((((--------------.....((((((((((((((((-(((.....))-)))(((...)))..........)))))))).))))))..))----))))).))......... ( -47.30)
>consensus
UGGGUGCCGGGCACUGCCUUUGUGUCCUGCCAGGACCUGCCACUUGGCUCAAAAGGGUUCAGCCGAAGGCAAUUAGAAACGGUGGCAGUGUCUUGUAUC____CUACACUGGGCGAAAUC
....((((((((((.......))))))...(((((((((((((((((.((.....)).)))(((...)))..........)))))))).))))))................))))..... (-32.96 = -33.65 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:29 2006