Locus 8058

Sequence ID X_DroMel_CAF1
Location 20,089,969 – 20,090,060
Length 91
Max. P 0.500000
window13225

overview

Window 5

Location 20,089,969 – 20,090,060
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 81.54
Mean single sequence MFE -21.20
Consensus MFE -18.37
Energy contribution -18.37
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -0.93
Structure conservation index 0.87
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20089969 91 + 22224390
GCCGACAUGGCGCCGUGCACGUGCUCAUCCACCUGCAGCAGGUGAUUUCCGCCACCCGCGAUUCCACCAACCCCCCCCCCCCCCCCUUCGU
..((...(((((.....(((.((((((......)).)))).))).....)))))....))............................... ( -19.80)
>DroSec_CAF1 38 78 + 1
GCCGACAUGGCGCCGUGCACGUGCUCAUCCACCUGCAGCAGGUGAU-UCCGCCUCCCGCAAUCGCACCACCCCCC------------UACC
(((.....)))...((((..(((......))).(((.(.(((((..-..))))).).)))...))))........------------.... ( -20.40)
>DroSim_CAF1 80 78 + 1
GCCGACAUGGCGCCGUGCACGUGCUCAUCCACCUGCAGCAGGUGAU-UCCGCCUCCCGCAAUCGCACCGCCCCCU------------ACCC
(((.....)))((.((((..(((......))).(((.(.(((((..-..))))).).)))...)))).)).....------------.... ( -23.40)
>consensus
GCCGACAUGGCGCCGUGCACGUGCUCAUCCACCUGCAGCAGGUGAU_UCCGCCUCCCGCAAUCGCACCACCCCCC____________UCCC
((.(....((((.....(((.((((((......)).)))).))).....))))..).))................................ (-18.37 = -18.37 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:25 2006