Locus 8057

Sequence ID X_DroMel_CAF1
Location 20,089,713 – 20,089,814
Length 101
Max. P 0.985619
window13224

overview

Window 4

Location 20,089,713 – 20,089,814
Length 101
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 73.95
Mean single sequence MFE -31.75
Consensus MFE -15.99
Energy contribution -16.02
Covariance contribution 0.03
Combinations/Pair 1.06
Mean z-score -2.43
Structure conservation index 0.50
SVM decision value 2.01
SVM RNA-class probability 0.985619
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20089713 101 - 22224390
GUCAU--C-UGGCGAUGGAGGU---------GGC-GUGGAGUCUUGAGAACUUGCUA-GGCGCU--GGCGAUAAGAUGAGCGUGCUAAAGUUUUAUUGGCGCAUAUUUAAGCUAUUA
.((((--(-....))))).(((---------(((-((...((((((.....((((((-(...))--)))))))))))..))(((((((.......)))))))........)))))). ( -28.70)
>DroVir_CAF1 11312 86 - 1
-C-------------GUGGCGU---------AGUUGUAGAG----CAGAACUUGCAA--GCGUU--GGCGAUAAGAUGAGCGUGCUAAAGUUUUAUUGCCGCAUAUUUAAGCUAUUA
-.-------------(((((.(---------((.(((...(----(((...))))..--.....--(((((((((((.((....))...))))))))))))))...))).))))).. ( -22.90)
>DroPse_CAF1 10930 89 - 1
GCCA-------GUUAGGUGGGU---------GG------------CAGAACUUGCCACGGCGCCGCGGCGAUAAGAUGAGCGUGCUAAAGUUUUAUUGCCGCAUAUUUAAGCUAUUA
...(-------(((.((((.((---------((------------(((...)))))))..))))(((((((((((((.((....))...))))))))))))).......)))).... ( -36.80)
>DroMoj_CAF1 11926 95 - 1
-CAAUGUC-UGA---GGGUUGC---------AGUUGUUGAG----CAGAACUUGCCA--GCGUU--GGCGAUAAGAUGAGCGUGCUAAAGUUUUAUUGCCGCAUAUUUAAGCUAUUA
-....(..-(((---(...(((---------....((((.(----(((...))))))--))...--(((((((((((.((....))...))))))))))))))..))))..)..... ( -27.30)
>DroAna_CAF1 21157 105 - 1
GUCAG--CCUCGUGUGGGAGGAGAAGCUUAAGGC-GUGG------CAGAACUUGCUA-GGCUCU--GGCGAUAAGACGAGCGUGCUAAAGUUUUAUUGCCGCAUAUUUAAGCUAUUA
.....--((((......))))...((((((((((-.(((------(((...))))))-.)))..--(((((((((((.((....))...)))))))))))......))))))).... ( -38.00)
>DroPer_CAF1 11186 89 - 1
GCCA-------GUUAGGUGGGU---------GG------------CAGAACUUGCCACGGCGCCGCGGCGAUAAGAUGAGCGUGCUAAAGUUUUAUUGCCGCAUAUUUAAGCUAUUA
...(-------(((.((((.((---------((------------(((...)))))))..))))(((((((((((((.((....))...))))))))))))).......)))).... ( -36.80)
>consensus
GCCA_______GU_AGGGGGGU_________GG__GU_G______CAGAACUUGCCA_GGCGCU__GGCGAUAAGAUGAGCGUGCUAAAGUUUUAUUGCCGCAUAUUUAAGCUAUUA
.....................................................((....)).....(((((((((((.((....))...)))))))))))((........))..... (-15.99 = -16.02 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:24 2006