Locus 8053

Sequence ID X_DroMel_CAF1
Location 20,068,040 – 20,068,132
Length 92
Max. P 0.561303
window13216

overview

Window 6

Location 20,068,040 – 20,068,132
Length 92
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 61.86
Mean single sequence MFE -24.36
Consensus MFE -6.40
Energy contribution -7.64
Covariance contribution 1.24
Combinations/Pair 1.17
Mean z-score -2.56
Structure conservation index 0.26
SVM decision value 0.06
SVM RNA-class probability 0.561303
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20068040 92 + 22224390
CACAUAUA-----UGGCAUAAGUAGUA--GUAGAAUAGCUAUUCUAUAGCUAAUUAAGCGGCAGCACUGAUUAGCUGGCCA--ACGUGCCGCAUCAAUCAG
........-----.(((((...((((.--(((((((....))))))).)))).......((((((........))).))).--..)))))........... ( -25.00)
>DroPse_CAF1 5253 82 + 1
CGCAAGUG----------CUGGUAGGUGCGGAGUAUAGAAAUACCCUAAAUA-----UCGACAA----GAUUGGCAGUCCUUUGAGUGCCUCAUCAGCCAC
.....(.(----------((((((((..(((.((((....))))))......-----((((...----(((.....)))..)))))..))).))))))).. ( -22.30)
>DroSec_CAF1 5574 80 + 1
AACAUAUA-----UAGCAUUUGUAGUA--GGAGAAUAGCUAUUCUCUAGCUAAUUAAGCGGCAGCACUG--------------ACGUGCUGCAGCAAUCAG
........-----.........((((.--(((((((....))))))).)))).....((.(((((((..--------------..))))))).))...... ( -26.60)
>DroSim_CAF1 4280 80 + 1
AACAUAUA-----UAGCAUUUGUAGUA--GCAGAAUAGCUAUUCUCUAGCUAAUUAAGCGGCAGCACUG--------------ACGUGCUGCAGCAAUCAG
........-----((((....(.((((--((......)))))))....)))).....((.(((((((..--------------..))))))).))...... ( -25.30)
>DroYak_CAF1 5596 89 + 1
AACAUUUAUAAUAUAACAUUUGUAGU----------AGCUAUUCUCUAGCUAAUUAGGCGGCAGCACUGAUUAGUAAGCCA--ACUGGCCGUAGCAAUCAG
.....((((((........)))))).----------.(((((......(((((((((((....)).)))))))))..(((.--...))).)))))...... ( -22.60)
>consensus
AACAUAUA_____UAGCAUUUGUAGUA__GGAGAAUAGCUAUUCUCUAGCUAAUUAAGCGGCAGCACUGAUU_G____CC___ACGUGCCGCAGCAAUCAG
...................................((((((.....)))))).....((((((.......................))))))......... ( -6.40 =  -7.64 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:17 2006