Locus 8052

Sequence ID X_DroMel_CAF1
Location 20,067,886 – 20,067,976
Length 90
Max. P 0.759020
window13215

overview

Window 5

Location 20,067,886 – 20,067,976
Length 90
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 68.53
Mean single sequence MFE -21.03
Consensus MFE -8.40
Energy contribution -9.36
Covariance contribution 0.96
Combinations/Pair 1.21
Mean z-score -1.84
Structure conservation index 0.40
SVM decision value 0.50
SVM RNA-class probability 0.759020
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20067886 90 + 22224390
UGUGUUACUAC-----UUUUGGCUAUUUGCUUCGCUACAUCAUA----AUGUAGCGCAAGUAGUAGUUAAACAUGACUGACCUAAAAACGAACUGUCAA
...........-----.((((((((((.((((((((((((....----)))))))).))))))))))))))..((((.................)))). ( -24.13)
>DroSec_CAF1 5431 80 + 1
----------C-----UUUUGGCUAUUUGCUUCGCUACAUCAUU----ACGUAGCGCCAAUAGUUGUUAAACAUGAUUGUCUGAAAAACUAACUGCCAA
----------.-----..(((((...(((...((((((......----..)))))).)))(((((.(((.(((....))).)))..)))))...))))) ( -18.20)
>DroSim_CAF1 4127 90 + 1
UGUGUUACUAC-----UUUUGGCUAUUUGCUUCGCUACAUCAUU----ACGUAGCGCCAAUAGUAGUUAAACAUGAUUGUCUGAAGAACUAACUGCCAA
.((((((((((-----(.(((((..........(((((......----..)))))))))).))))))..)))))......................... ( -21.30)
>DroEre_CAF1 5351 98 + 1
UGUGCUAUUGCUUGCCUUUUGGGUAUUUUCGUUGCUACUUCAUGUAAGUUGUAAUGCAAAUGGUGGUUAUAUACGACUGCAU-AAGAACUAAACGCCCA
...((....))........(((((((((.((((((.((((.....)))).)))))).)))).(..(((......)))..)..-...........))))) ( -20.20)
>DroYak_CAF1 5442 89 + 1
UGUGUUACUACUUGCUUUUUGGCUAUCUGCAGUGCUACAUCAUU----UUGUCAUGCAAGUAGUGGUGCUACAUGGCUAUCU-AAAAAAU-----CUAA
.(..(((((((((((......((.....)).(((..(((.....----.)))))))))))))))))..).............-.......-----.... ( -21.30)
>consensus
UGUGUUACUAC_____UUUUGGCUAUUUGCUUCGCUACAUCAUU____AUGUAGCGCAAAUAGUAGUUAAACAUGACUGUCU_AAAAACUAACUGCCAA
.....................(((((((((...(((((............))))))))))))))................................... ( -8.40 =  -9.36 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:16 2006