Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,245,011 – 2,245,117 |
Length | 106 |
Max. P | 0.860042 |
Location | 2,245,011 – 2,245,117 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 95.02 |
Mean single sequence MFE | -30.71 |
Consensus MFE | -26.24 |
Energy contribution | -26.93 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.07 |
Mean z-score | -2.16 |
Structure conservation index | 0.85 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.860042 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2245011 106 - 22224390 AGCGGUCUCAGCGGGUU-UGGGCAACCGUAUUCAUAAGUACUCUCAACCGAAGUUUCGGGAAAACUCAGUUUUCCACAAA-AACCCGGCCAACCAACUCCCCCGCAAU .((((.......(((((-(((....))((((......)))).......(((....)))(((((((...)))))))....)-)))))((....)).......))))... ( -29.40) >DroSec_CAF1 7960 106 - 1 AGCGGUCUCAGCGGUUU-UGGGCAACCGUAUUCUUAAGUACUCUCAAUCGAAGUUUCGGGAAAACUCAGUUUUCCACGAA-ACCCCGGCCAACCAACUCCCCCGCAAU .((((.......((((.-..(((....((((......)))).......((..(((((((((((((...))))))).))))-))..))))))))).......))))... ( -32.24) >DroEre_CAF1 8232 107 - 1 AGCGGUCUCAGCGGGUUUUGGGCAACCGUAUUCUUAAGUACACUCAACCGAAGUUUCGGGGAAACUCAGUUUUCCACGAA-AACCCGGCCAACCAACUCCCCCGCAAU .((((....((..((((..((....))((((......))))......(((...((((((((((((...))))))).))))-)...)))..))))..))...))))... ( -33.60) >DroYak_CAF1 8730 107 - 1 AGCGGUCUCAGCGGGUU-UGGGCAACCGUAUUCUUAAGUACUCUCAACCGAAGUUUCGGGCUAACUCAGUUUUCCACGAAAAACCCGGCCAACCAACUCCCCCGCAAU .((((....((..((((-.((....))((((......))))......(((...(((((((..(((...)))..)).)))))....)))..))))..))...))))... ( -27.60) >consensus AGCGGUCUCAGCGGGUU_UGGGCAACCGUAUUCUUAAGUACUCUCAACCGAAGUUUCGGGAAAACUCAGUUUUCCACGAA_AACCCGGCCAACCAACUCCCCCGCAAU .((((....((..((((..((....))((((......))))......(((....(((((((((((...))))))).)))).....)))..))))..))...))))... (-26.24 = -26.93 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:13 2006