| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,063,081 – 20,063,186 |
| Length | 105 |
| Max. P | 0.705136 |
| Location | 20,063,081 – 20,063,186 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 78.84 |
| Mean single sequence MFE | -22.45 |
| Consensus MFE | -15.31 |
| Energy contribution | -15.87 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20063081 105 - 22224390 C-----CAUU-A----CUCGCAGGGGAAACACCUACCUCGUCUAUAUUCCGUAACCAUUUGACUAUGUUCUCGAAACUCUUCUCGUUCGUUAUGUCAUAGACCAGCAUUAUGCCC .-----....-.----...((((((....).))).....((((((....(((((((((......)))....(((........)))...))))))..))))))..))......... ( -18.00) >DroVir_CAF1 933 106 - 1 C-----CGCUGG----CUGGCCGGCUUGUAGCUUACCUCGUCUAUGUUCCGUAACCAUUUGACUAUGUUCUCGAAACUUUUCUCGUUCGUUAUGUCAUAGACGAGCAUUAUGCCC .-----.(((((----....))))).....((....((((((((((...(((((((((......)))....(((........)))...)))))).))))))))))......)).. ( -29.80) >DroPse_CAF1 879 103 - 1 CCACUUAUUU-A----CUCUU-------GCACUCACCUCGUCUAUGUUCCGUAGCCAUUUGACGAUAUUCUCGAAACUCUUUUCGUUCGUUAUGUCAUAGACUAGCAUGAUGCCC ..........-.----.....-------(((.(((.((.(((((((...((((((.....(((((.................))))).)))))).))))))).))..)))))).. ( -20.13) >DroYak_CAF1 719 105 - 1 C-----CAUU-G----CUCUCAGGGGGAUCAUUUACCUCGUCUAUAUUUCGUAACCAUUUGACUAUAUUCUCGAAGCUCUUCUCGUUCGUUAUGUCAUAGACGAGCAUUAUGCCC .-----...(-(----(((...((((.........))))((((((....((((((.....((........))(((....)))......))))))..)))))))))))........ ( -22.90) >DroMoj_CAF1 963 106 - 1 U-----U--UGGGAAUUUGAUUGGAU--UUACUUACCUCGUCUAUGUUCCGUAACCAUUUGACUAUAUUCUCGAAACUUUUCUCAUUCGUUAUGUCAUAGACGAGCAUUAUGCCC .-----.--.((((((((....))))--).......((((((((((...((((((....(((....................)))...)))))).)))))))))).......))) ( -20.95) >DroAna_CAF1 756 101 - 1 A-----C-GU-G----AUCUCAAGGGGA---CUCACCUCGUCUAUGUUCCGCAGCCAUUUGACUAUGUUCUCGAAGCUCUUCUCGUUCGUUAUGUCAUAGACGAGCAUUAUGCCC .-----(-((-(----(((((..((((.---....))))(((((((.....))......((((.(((....(((........)))..)))...)))))))))))).))))))... ( -22.90) >consensus C_____C_UU_G____CUCUCAGGGG_AUCACUUACCUCGUCUAUGUUCCGUAACCAUUUGACUAUAUUCUCGAAACUCUUCUCGUUCGUUAUGUCAUAGACGAGCAUUAUGCCC ....................................((((((((((...((((((..(((((........)))))((.......))..)))))).)))))))))).......... (-15.31 = -15.87 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:04 2006