Locus 8048

Sequence ID X_DroMel_CAF1
Location 20,062,020 – 20,062,119
Length 99
Max. P 0.884804
window13207

overview

Window 7

Location 20,062,020 – 20,062,119
Length 99
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 90.44
Mean single sequence MFE -24.72
Consensus MFE -18.36
Energy contribution -19.44
Covariance contribution 1.08
Combinations/Pair 1.12
Mean z-score -2.33
Structure conservation index 0.74
SVM decision value 0.93
SVM RNA-class probability 0.884804
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20062020 99 + 22224390
AUCGAAGUUGCCACACUGGUGAGAGCAUGGAUGGUAUCGAACAGAUAUCGAUUCAUGUUCCAGCUCUAGUUCUAAUAGCAACAAUUUCAAGCGAA-AAUA
......(((((...(((((.(.((((((((((((((((.....)))))).))))))))))...).))))).......)))))..((((....)))-)... ( -29.40)
>DroSec_CAF1 9653 99 + 1
AUCGAAGUUGCCACACUUUUGAGAGCAUGAAUGGUAUCGAACAGAUAUCGAUUCAUGUUCCAGCUCUAGUUCUAAUAGCAACAAUUUCAAGCGAA-AAUA
...(((((((.........((.((((((((((((((((.....)))))).))))))))))))(((...........)))..))))))).......-.... ( -27.30)
>DroSim_CAF1 9381 99 + 1
AUCGAAGUUGCCACACUGCUGAGAGCAUGAAUGAUAUCGAACAGAAAUCGAUUCAUGUUCCAGCUCUAGUUCUAAUAGCAACAAUUUCAAGCGAA-AAUA
...(((((((.......((((.(((((((((((((.((.....)).))).))))))))))))))....(((.....)))..))))))).......-.... ( -28.60)
>DroEre_CAF1 9865 100 + 1
AUAAAACCUGCCACACUUCGAUUAGCAUCGGUGUUAUCGAGCAGAUAUCGUUUCAUGUUCCAGCUCUAGUUCUAAUAGCAACAAUUGCAAGCGAAAAAUA
.......((((......(((((.((((....)))))))))))))...((((((..((((..(((....)))..))))(((.....)))))))))...... ( -17.50)
>DroYak_CAF1 10153 99 + 1
AUCGAAGUUGCCACACUUCUUAGAGCAUCGAUGGUAUCGAGCAGAUAUCGAUUCAUGUUCCAGCUCUAGUUCUAAUAGCAACAAUUGCAAGCGAA-AAUA
......(((((........(((((((......((((((.....))))))((.......))..)))))))........)))))..(((....))).-.... ( -20.79)
>consensus
AUCGAAGUUGCCACACUUCUGAGAGCAUGGAUGGUAUCGAACAGAUAUCGAUUCAUGUUCCAGCUCUAGUUCUAAUAGCAACAAUUUCAAGCGAA_AAUA
......(((((...........((((((((((((((((.....)))))).)))))))))).(((....)))......))))).................. (-18.36 = -19.44 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:54:04 2006