Locus 8045

Sequence ID X_DroMel_CAF1
Location 20,023,187 – 20,023,277
Length 90
Max. P 0.688904
window13202

overview

Window 2

Location 20,023,187 – 20,023,277
Length 90
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 85.03
Mean single sequence MFE -20.81
Consensus MFE -14.69
Energy contribution -15.38
Covariance contribution 0.69
Combinations/Pair 1.11
Mean z-score -1.72
Structure conservation index 0.71
SVM decision value 0.32
SVM RNA-class probability 0.688904
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20023187 90 + 22224390
CUAUAAUACAUUUACAUUUGGGCUCUUUCAGUUGA--GGGGACGUAGCUCCAUCUUCAGUCCUCGUACCUUCAUUCCCAAGCCCCCACUUCC-------
...................(((((........(((--(((.(((..(((........)))...))).))))))......)))))........------- ( -19.14)
>DroSec_CAF1 2743 92 + 1
CUAUAAUACAUUUACAUUUGGGCUCUUUCAGUUGAGAGGGGACGCAGCUCCAUCGUCAGUGCUCGUACCUUCAUUCCCGAGCCCCCACUUCC-------
...................((((((..((....))(((((.(((.(((.(........).)))))).)))))......))))))........------- ( -24.90)
>DroEre_CAF1 2819 96 + 1
CUCUAAUACAUUUACAUUUGGGCUCUUUCCGUUGA--GUGGAUGUUGCUCCACCUUCAGUGCUCGUACCUUCAAUCCCGAGCCC-CAUUUCCUGUCUGA
...................((((((.....(((((--(((((......))))).....(((....)))..)))))...))))))-.............. ( -20.00)
>DroYak_CAF1 3291 97 + 1
CUCUAAUACAUUUACAUUUGGGCUCUUUCAGUUGA--GUGGAAGUAGCUCCCUCUUCAGCGCUCGUACCUUCAAUCCCGAGCCCUCAUUUCCUGUCUGA
...................((((((........((--(((((((.((....))))))..)))))(......)......))))))............... ( -19.20)
>consensus
CUAUAAUACAUUUACAUUUGGGCUCUUUCAGUUGA__GGGGACGUAGCUCCAUCUUCAGUGCUCGUACCUUCAAUCCCGAGCCCCCACUUCC_______
...................((((((.....(((((....(((((..(((........)))...))).)).)))))...))))))............... (-14.69 = -15.38 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:59 2006