| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 20,006,616 – 20,006,720 |
| Length | 104 |
| Max. P | 0.649479 |
| Location | 20,006,616 – 20,006,720 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.69 |
| Mean single sequence MFE | -42.82 |
| Consensus MFE | -31.87 |
| Energy contribution | -30.52 |
| Covariance contribution | -1.36 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20006616 104 + 22224390 CGAAUCCCUUCAUCGCCGCCCGCAGCACCUGGGCGUCCUGGGAGGCGUCGAAGGGAGCUGCGUCCUUAACCGUGGGCACGGGCUGCACAGUA-A-AAAUUUAGUUG------ ....(((((((..((((.((((..((.(....).))..)))).))))..)))))))((((.((......((((....))))...)).)))).-.-...........------ ( -40.50) >DroPse_CAF1 1120 108 + 1 CCAAUCCCUUCAUGGCGGCCCUCAGGGUCUGGGCAUCGGCGGCCGCAUCGAAGGGGGUGGCUCCCACAACCGUAGGCACGGGCUGGAUGACGCA-UAGUUUUGUU---AUUU (((..((((((...((((((.((...((....))...)).))))))...))))))..)))...(((...((((....))))..)))((((((..-......))))---)).. ( -40.00) >DroSim_CAF1 1283 102 + 1 CGAAUCCCUUCAUCGCCGCCCGCAGCACCUGGGCGUCCUGGGCGGCGUCGAAGGGAGCUGCGUCCUUAACCGUGGGCACGGGCUGCACAGUG-A-AAAUGUAUU-------- ....(((((((..(((((((((..((.(....).))..)))))))))..)))))))((((.((......((((....))))...)).)))).-.-.........-------- ( -46.20) >DroEre_CAF1 1357 110 + 1 CGAAUCCCUUCAUCGCCGCCCGCAGCACCUGGGCGUCCUGGGAGGCGUCGAAGGGAGCUGCAUCCUUAACCGUGGGCACGGGCUGGGCGGUG-A-UAAUUAAGUUGAUAUAA ...........(((((((((((((((.(((.((((((......))))))..)))..)))))........((((....))))...))))))))-)-)................ ( -48.00) >DroYak_CAF1 1564 111 + 1 CGAAUCCCUUCAUCGCCGCCCGCAGCACCUGGGCAUCCUGGGAGGCGUCGAAGGGAGCUGCGUCCUUAACCGUGGGCACGGGCUGCACAGUG-AACAAUAAAGUUGACAUAA ....(((((((..(((((((((.......))))).((....))))))..))))))).(((.((((........)))).)))........((.-(((......))).)).... ( -42.20) >DroPer_CAF1 880 108 + 1 CCAAUCCCUUCAUGGCGGCCCUCAGGGUCUGGGCAUCGGCGGCCGCAUCGAAGGGGGUGGCUCCCACAACCGUAGGCACGGGCUGGAUGACGCA-UAGUUUUGUU---AUUC (((..((((((...((((((.((...((....))...)).))))))...))))))..)))...(((...((((....))))..)))((((((..-......))))---)).. ( -40.00) >consensus CGAAUCCCUUCAUCGCCGCCCGCAGCACCUGGGCAUCCUGGGAGGCGUCGAAGGGAGCUGCGUCCUUAACCGUGGGCACGGGCUGCACAGUG_A_UAAUUUAGUU___AU__ ....(((((((..((((((((.........))))..(....).))))..)))))))((((.((......((((....))))...)).))))..................... (-31.87 = -30.52 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:58 2006