Locus 8041

Sequence ID X_DroMel_CAF1
Location 19,987,714 – 19,987,829
Length 115
Max. P 0.643496
window13196

overview

Window 6

Location 19,987,714 – 19,987,829
Length 115
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 91.27
Mean single sequence MFE -36.42
Consensus MFE -27.72
Energy contribution -27.40
Covariance contribution -0.32
Combinations/Pair 1.22
Mean z-score -1.68
Structure conservation index 0.76
SVM decision value 0.23
SVM RNA-class probability 0.643496
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19987714 115 - 22224390
CCCAUUUUUGAUUUAUGCCG-GGUCAUGUGACUUGUGUUCCGGUCAAAUCGGGAAAAUACCUCCAAUGGGGCCAAUAAUUGGGGGCCGGCCACUCAAAGUGGGCAAAUAGAAAAUC
((((((((.((.....((((-((((....))).....(((((((...))))))).....((((((((..........)))))))))))))...))))))))))............. ( -36.30)
>DroSec_CAF1 25334 116 - 1
CCCAUUUUUGAUUUAUGCCGGGGUCAUAUGACUUGUGUUCCGGUCAAAUCGGGAAAAUACCUCCAGUGGAAUCCAUAAUUGGGGGCCGGCCACUCAAAGCGGGCAAAUGGAAAAUC
.(((((((((((((..(((((((.((((.....))))))))))).)))))))))).....(((((((..........)))))))(((.((........)).)))...)))...... ( -37.30)
>DroSim_CAF1 18471 114 - 1
CCCAUUUUUGAUUUAUGCCGGGGUCAUAUGACUUGUGUUCCGGUCAAAUCGGAAAAAUACCUCCAGUGGAGCCCAUAAUUGG--GCCGGCCACUCAAAGCGGGCAAAUGGAAAAUC
(((.((((((((((..(((((((.((((.....))))))))))).)))))))))).........(((((.(((((....)))--))...)))))......)))............. ( -39.40)
>DroEre_CAF1 20120 115 - 1
CCCAUUUUUGAUUUAUGCCG-GGUCAUAUGACCUAUGUUCCGGUCGAAUCGGGGAAAUACAUCCAGUGGAGCCAAUAAUUGGGGGCCAGGCACUCAAAGGCGGCAAAUAGAAAAUC
.(((((.(((((((..((((-(..((((.....))))..))))).)))))))(((......)))))))).(((.....(((((.((...)).)))))....)))............ ( -30.90)
>DroYak_CAF1 18162 115 - 1
CCCAUUUUUGAUUUAUGCCG-GGUCAUAUGACUUAUGUUCCGGUCGAAUCGGGAAAAUACCUCCAGUGGGGCCUAUAAUUGGGGGCCGGCCACUCAAAGCGGGCUAAUAGAAAAUC
((((((..((((((..((((-(..((((.....))))..))))).))))))(((.......))))))))).((((....))))((((.((........)).))))........... ( -38.20)
>consensus
CCCAUUUUUGAUUUAUGCCG_GGUCAUAUGACUUGUGUUCCGGUCAAAUCGGGAAAAUACCUCCAGUGGAGCCAAUAAUUGGGGGCCGGCCACUCAAAGCGGGCAAAUAGAAAAUC
((((((((((((((..((((.(..((((.....))))..))))).)))))))))).....((((...))))........)))).(((.((........)).)))............ (-27.72 = -27.40 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:54 2006