Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,242,749 – 2,242,850 |
Length | 101 |
Max. P | 0.804382 |
Location | 2,242,749 – 2,242,850 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 85.29 |
Mean single sequence MFE | -34.15 |
Consensus MFE | -22.34 |
Energy contribution | -22.27 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.12 |
Mean z-score | -1.87 |
Structure conservation index | 0.65 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2242749 101 + 22224390 UCUGCGCUGCGGUUGCUAACCAUAAAAUUGAGCGGGUCCUUUAGACAAGGAGUCUUAAAGGAUGCUCUAUGGCUCUACGGUCUGAGAUCUGCGAUUUGCGU ...((((...((((((...(((((.....((((..(((((((((((.....))).)))))))))))))))))(((........)))....)))))).)))) ( -32.00) >DroSec_CAF1 5727 101 + 1 UCUGCGCUGCGGUUGCCAACCAUAAAAUUGAGCGGGUCCUUUGGACAAGGAGUCUUAAAGGAUGCUCUGUGGCUCUAUGGUCUGAGAUCUGCGAUGUGCGU ...(((((((((...(((((((((..((.((((..(((((((((((.....))).)))))))))))).)).....)))))).)).)..)))))..)))).. ( -33.90) >DroEre_CAF1 5947 100 + 1 UCUGCGCUGCGGUUGCCAACCAUAAAAUUGAGCGGGUCCUUUGGACAAGGAGUCUUAAAGGAUGCUCUAUGG-UCUGCGAUCGGCGAUCCGCGAUGUGCGU ...((((..(((((((..((((((.....((((..(((((((((((.....))).)))))))))))))))))-)..)))))))(((...)))...)))).. ( -39.60) >DroYak_CAF1 6226 86 + 1 UCUGCGCUGCGGUUGCCAACCAUAAAAUUGAGCGGCUCCUUUGGACAAGGUUUCCUUAAGGAUGCUCUAUGG-UCUGCGAUC--------------UGCGU ...((((...((((((..((((((.....(((((..(((((.(((.......)))..)))))))))))))))-)..))))))--------------.)))) ( -31.10) >consensus UCUGCGCUGCGGUUGCCAACCAUAAAAUUGAGCGGGUCCUUUGGACAAGGAGUCUUAAAGGAUGCUCUAUGG_UCUACGAUCUGAGAUCUGCGAUGUGCGU ...((((.((....))...(((((.....(((((..((((((((((.....)))).)))))))))))))))).........................)))) (-22.34 = -22.27 + -0.06)
Location | 2,242,749 – 2,242,850 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 85.29 |
Mean single sequence MFE | -28.05 |
Consensus MFE | -22.51 |
Energy contribution | -23.45 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.11 |
Mean z-score | -1.80 |
Structure conservation index | 0.80 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2242749 101 - 22224390 ACGCAAAUCGCAGAUCUCAGACCGUAGAGCCAUAGAGCAUCCUUUAAGACUCCUUGUCUAAAGGACCCGCUCAAUUUUAUGGUUAGCAACCGCAGCGCAGA .(((...............((((((((((.....((((.(((((((.(((.....))))))))))...))))..)))))))))).((....)).))).... ( -29.40) >DroSec_CAF1 5727 101 - 1 ACGCACAUCGCAGAUCUCAGACCAUAGAGCCACAGAGCAUCCUUUAAGACUCCUUGUCCAAAGGACCCGCUCAAUUUUAUGGUUGGCAACCGCAGCGCAGA .(((...............((((((((((.....((((.((((((..(((.....))).))))))...))))..)))))))))).((....)).))).... ( -26.90) >DroEre_CAF1 5947 100 - 1 ACGCACAUCGCGGAUCGCCGAUCGCAGA-CCAUAGAGCAUCCUUUAAGACUCCUUGUCCAAAGGACCCGCUCAAUUUUAUGGUUGGCAACCGCAGCGCAGA ..((.(...((((...((((((((.(((-..((.((((.((((((..(((.....))).))))))...)))).))))).))))))))..)))).).))... ( -32.00) >DroYak_CAF1 6226 86 - 1 ACGCA--------------GAUCGCAGA-CCAUAGAGCAUCCUUAAGGAAACCUUGUCCAAAGGAGCCGCUCAAUUUUAUGGUUGGCAACCGCAGCGCAGA .(((.--------------(...((.((-(((((((((.(((....)))..((((.....))))....)))).....))))))).)).....).))).... ( -23.90) >consensus ACGCACAUCGCAGAUCUCAGACCGCAGA_CCAUAGAGCAUCCUUUAAGACUCCUUGUCCAAAGGACCCGCUCAAUUUUAUGGUUGGCAACCGCAGCGCAGA .(((...............(((((((((......((((.((((((.((((.....))))))))))...))))...))))))))).((....)).))).... (-22.51 = -23.45 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:12 2006