| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,976,485 – 19,976,602 |
| Length | 117 |
| Max. P | 0.765154 |
| Location | 19,976,485 – 19,976,602 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 76.30 |
| Mean single sequence MFE | -38.62 |
| Consensus MFE | -17.87 |
| Energy contribution | -18.23 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.765154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19976485 117 - 22224390 CCACCGCCAUGCUGCACACGACCGCCCUCAUGGCGAAUGCGACACUUGUCCUCAAUCUGAGCUCCUAUCCGGGCACCUACCUCAUCCUGGUCAGUGUCCACACCAAGGCGCUCGCCC ....(((((((..((........))...)))))))...(((((....)))........((((.(((....((((((..(((.......)))..))))))......))).)))))).. ( -38.70) >DroPse_CAF1 6281 117 - 1 UGACGGUCUGUCUGCACAGCGUCGGCAUCAUAGAGAAUGCCUUGUUGGUUUGCAACGUGGACACCUAUCCGGGCUCCUAUCUCAAUAUGCUGGCCGCCCACACCCAGGCCCUGGCCC ....((((((..((....((((((((((.((.((((..((((.((((.....))))..(((......))))))).....)))).))))))))).)))...))..))))))....... ( -37.10) >DroSec_CAF1 11819 117 - 1 CCACCGCCAUGCUGCACACGACCGCUAUCAUGGCGAAUGCGACUGCUGUCCUCAAUCUGUGCACCUAUCCGGGCACCUACCUCAUCCUGGUCAGUGCCCACACCAAGGCGCUCGCCC ....(((((((..((........))...)))))))...((((.(((((..(.......)..)........((((((..(((.......)))..)))))).......)))).)))).. ( -39.60) >DroEre_CAF1 10893 117 - 1 CCACCGUCCUGCUGCACACCAGCGCCAUCUUUGCGAACGCGGCAACGGUCCUCAACCUGACCACCUACCCGGGCACCUACCUCAUCCUGGUCAGUGCCCACGCCAAGGCGCUCGCCC ....................((((((......((....))(((...((((........))))........((((((..(((.......)))..))))))..)))..))))))..... ( -40.80) >DroYak_CAF1 9304 117 - 1 CCACCGCCAUACUGCACACGAGCGCCCUCAUUGCGAAUGCGACGACGGUCACCAAUCUGUGCACCUAUCCGGGCACCUACCUCAUCCUGGUCAGUGCCCACACCAAGGCGCUUGCCC .....((......))...((((((((.((.((((....)))).)).((((((......))).))).....((((((..(((.......)))..)))))).......))))))))... ( -39.60) >DroPer_CAF1 6772 117 - 1 UGACGGCCAGUCUGCACAGCGUCGGCAUCAUAGAGAACGCCUUGUUGGUUUGCAACGUGGACACCUAUCCGGGCUCCUAUCUCAUCAUGCUAGCCGCCCACACCCAGGCCCUGGCCU ....((((((........(.((..((((.((.((((..((((.((((.....))))..(((......))))))).....)))))).))))..)))(((........))).)))))). ( -35.90) >consensus CCACCGCCAUGCUGCACACCACCGCCAUCAUAGCGAAUGCGACGACGGUCCUCAACCUGAGCACCUAUCCGGGCACCUACCUCAUCCUGGUCAGUGCCCACACCAAGGCGCUCGCCC ....(((..(((....................)))...))).............................((((((..(((.......)))..)))))).......(((....))). (-17.87 = -18.23 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:47 2006