Locus 8036

Sequence ID X_DroMel_CAF1
Location 19,971,755 – 19,971,851
Length 96
Max. P 0.636626
window13187

overview

Window 7

Location 19,971,755 – 19,971,851
Length 96
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 71.60
Mean single sequence MFE -39.50
Consensus MFE -26.10
Energy contribution -25.73
Covariance contribution -0.38
Combinations/Pair 1.16
Mean z-score -1.37
Structure conservation index 0.66
SVM decision value 0.21
SVM RNA-class probability 0.636626
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19971755 96 - 22224390
UGACCACGUGAAUGGGACCCG------------------GUCCCGCUCCUAUUC------CCGUUCCUGGCCCCGCUGCCGCUGAUUCGUGGGUUAGGCUGUAAACGGCCUUGGGGUUAC
.....(((.((((((((..((------------------....)).))))))))------.)))...(((((((....((((......))))...((((((....)))))).))))))). ( -37.80)
>DroSec_CAF1 6591 114 - 1
UGACCACGUGAAUGGGACCCGCUGCCGCUCCCGCUCCCGCUCCCGCUCCUAUUC------CCGUUCCUGGCCCCGCUCCCGCUGACUCGUGGGCCAGGCUGUAAACGGCCUUGGGGUUAC
.....(((.((((((((.(.(..((.((....))....))..).).))))))))------.)))...(((((((...(((((......)))))..((((((....)))))).))))))). ( -41.30)
>DroEre_CAF1 8045 78 - 1
UGACCAAGUGAAUGGGACCCG------------------CGCCCGCUCCCGGUC------------------------CCGCUGAUUCGUGGGCCAGGCUGUAAACGGCCUUGGGGUUAU
(((((....((.((((.....------------------..)))).))((((.(------------------------((((......)))))))((((((....)))))).))))))). ( -31.80)
>DroYak_CAF1 6656 102 - 1
UGACCACGUGAAUGGGAGCUG------------------CUCCUGCUCCCGAUCCCACCACCAAUCCUGGGCCUGGACCCGCUGAUUCGUGGGCCAGGCUGUAAACGGCCUUGGGGUUAU
(((((..(.((.(((((((..------------------.....))))))).)).)....((((..((((((((((.(((((......)))))))))))).....)))..))))))))). ( -47.10)
>consensus
UGACCACGUGAAUGGGACCCG__________________CUCCCGCUCCCAUUC______CCGUUCCUGGCCCCGCUCCCGCUGAUUCGUGGGCCAGGCUGUAAACGGCCUUGGGGUUAC
(((((....((((((((.............................))))))))........................((((......)))).((((((((....))))).)))))))). (-26.10 = -25.73 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:46 2006